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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43370.1 | AT | RNA-binding (RRM/RBD/RNP motifs) family protein | JGI | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0000243 | GO-cc | commitment complex | EnsemblGenomes | N/A | IEA |
| GO:0005689 | GO-cc | U12-type spliceosomal complex | EnsemblGenomes | N/A | IEA |
| GO:0071011 | GO-cc | precatalytic spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003729 | GO-mf | mRNA binding | EnsemblGenomes | N/A | IEA |
| GO:0017069 | GO-mf | snRNA binding | EnsemblGenomes | N/A | IEA |
| KOG0113 | KOG | U1 small nuclear ribonucleoprotein (RRM superfamily) | JGI | N/A | IEA |
| PTHR13952 | Panther | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | JGI | N/A | IEA |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | N/A | IEA |
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Glyma.18g296100 not represented in the dataset |
Glyma.18g296100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g366200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g53350 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g296100.1 sequence-type=CDS polypeptide=Glyma.18g296100.1.p locus=Glyma.18g296100 ID=Glyma.18g296100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTGTTCGGTCCAAAAACTTGAACTCTGTATTCTATGCAGATTCGTACCATCCCATTCAAGCTGGCAGCATCGACGGCACCGATGTTGTTCCTCACGATAACGCCGTTTATCGCGCTCAACTCTGTTCCTCCATCGGCCTCTATGACCCATTTGGTGATCCCAAGGCCACTGGAGACCCTTATTGCACTCTCTTTGTCGCTCGTCTCTCTCGCCTCACCACCGAAGATGATCTCCGCAAGGTCATGAGTAAGTATGGTCGAGTGAAGAACTTACGCTTGGTTAGGGACATTGTGACGGGAGCTTCTCGTGGTTATGCTTTTGTTGAATACGAGACTGAAAGGGAGATGCGACGAGCATATATGGATGCTCATCATTTGATTGTTGATGATTCTGAAATCATAGTTGATTACAACAGACAGCAATTGATGCCTGGATGGATTCCTAGAAGGTTAGGTGGTGGTCTTAGTGGTAAGAAGGAATCGGGACAACTTCGTTTTGGGGGGAGAGAAAAGCCATTTCGTGCACCCCTGAAACCAATTCCATATGAGGAGTTGAAGAAGCTTGGCATCCCCCCTCCTCCCGAGGGAAGATACATGTCACGCTTTCAGGTGCCATCGCCTCCTAGAAGTGAAAGGAGCCTTTCAGACAGGGAAGAAGACTCTCATAGCCACAGAAGGGGATCTAATGACAGGAACAGGAACAAGACGGAAGATGGACTCAGAAGTTCAGTGGACATTGAGGAAGGGCATTATAGGAGTTCAAGTCATCGTGATAACCACTCACGTGGAAGGAGCTCTATGGAGAGGAGTGGTCGTTACCATGACCGGAGTTCATCTGAGAAAGAACATCGACACGGGAGTTCTACTGACAAAGACAAACATTCTCAGAAGAGAAAAGAAAGTGACAGGAGTTCACTTGAGAAAGAACGTCGACACAGGAGTTCTACTGACAAAGACAAACATTCTCGGAAGAGAAAAGAAAGAGATGAACGGTCTCAAAGGCGGGAAAAATATAGTCACCATTCCCCTCACAAGGACTAA
>Glyma.18g296100.1.p sequence-type=predicted peptide transcript=Glyma.18g296100.1 locus=Glyma.18g296100 ID=Glyma.18g296100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVRSKNLNSVFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGLYDPFGDPKATGDPYCTLFVARLSRLTTEDDLRKVMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYMDAHHLIVDDSEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGREKPFRAPLKPIPYEELKKLGIPPPPEGRYMSRFQVPSPPRSERSLSDREEDSHSHRRGSNDRNRNKTEDGLRSSVDIEEGHYRSSSHRDNHSRGRSSMERSGRYHDRSSSEKEHRHGSSTDKDKHSQKRKESDRSSLEKERRHRSSTDKDKHSRKRKERDERSQRREKYSHHSPHKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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