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Report for Sequence Feature Glyma.18g291800

Feature Type:gene_model
Chromosome:Gm18
Start:57038198
stop:57048084
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g291800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58140.1AT phenylalanyl-tRNA synthetase class IIc family protein JGI N/AIEA
GO:0006432GO-bp phenylalanyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0006432GO-bp phenylalanyl-tRNA aminoacylation JGI N/AIEA
GO:0008033GO-bp tRNA processing JGI N/AIEA
GO:0043039GO-bp tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0043039GO-bp tRNA aminoacylation JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0000049GO-mf tRNA binding EnsemblGenomesN/AIEA
GO:0000049GO-mf tRNA binding JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0004826GO-mf phenylalanine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004826GO-mf phenylalanine-tRNA ligase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG2783 KOG Phenylalanyl-tRNA synthetase JGI N/AIEA
PTHR11538Panther PHENYLALANYL-TRNA SYNTHETASE JGI N/AIEA
PF01409PFAM tRNA synthetases class II core domain (F) JGI N/AIEA
PF03147PFAM Ferredoxin-fold anticodon binding domain JGI N/AIEA

Expression Patterns of Glyma.18g291800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g291800 not represented in the dataset
Glyma.18g291800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g291800
ParalogEvidenceComments
Glyma.02g091300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g291800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g52890 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g291800
>Glyma.18g291800.2 sequence-type=transcript locus=Glyma.18g291800 ID=Glyma.18g291800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAGAGAGTGTGTGGATAAAATAAATTAATAAAAAAAGCCCAATTTATCCGAGAATACAAAAATGGATGGGGCTCTTAACTCTGAACTATAGTAGCTTGAGGCTTGAGCTAGCTACTCTACACACTTAGCacaacaacaacaacaacCATATTTCCAACTTGAGACACCGGATTCTGTAGGATAAGAGCTTATCAAGAGTAGAGTTGCCTTGTGCAATCTGTTTCTGTCTTCTGTCTAGTGCATCAGATATAGCTGGTTAAGATTCTCTACTCGGGTGCATGGCAATGGTGATCTCTTCTGTTCATGCCACACTATTTGCCAGGGCCTCTTTCTTTTGCCAAAGTAGTGGCCTAAGAAGCTTTAGGTCGTGTTTACCTTTCTCATCTTCAGCTGCTTCTGTCTCCACTCACAATTTTTCACGGAAGAAATGGAGGCAGCCAGTGTTGTCAGTATTGGATCTTGGCGGAGTCAACATAAGCAGAGAAGATGTGGTGAGGGATGATCCAACAAATAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCATCTTCACAGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCAATTTATGAGTATTTTGACACACATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTAAGTAGGAGCTATAATGATACTTACTACATAGACCCTCAGACTGTTTTGAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCGGAAGAATGGGAGGCATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGTCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCGTTTGAACTTGAAATATATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTTGGTCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAATGAATCATTCACCGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTCGAGGAGGTGCAATTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCACTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGAGCTATAAATGTTGAAAATTTACAGCTTTGCTGTGTTCAATCTCATTTTTGTTAATGTATAGATGTTTTGCCTCCCTTTAGCGATTGAACAGCGCTATAGACAGATGTATTATTTAATTTCACATAGTGAATATACCCTACAATACATAACGAGCCATGGCTAGTCCAACAGGATTATCTGTATTATCTACTGTCCTGTTTTGGGGAAAAAAATATTTTATTGTAAAATTTCTGGACCCCGACACACGAAATGGTATGTTCTCCAACAATAAATCTTTTGTTTGTGTTTTCATAGCAAAGCACTGATATGATCTTGCCGAAAAATAAAAGAATCCTCATTGCCAAACAGTGGGATTGTGGACGATTGTTTATA

>Glyma.18g291800.3 sequence-type=transcript locus=Glyma.18g291800 ID=Glyma.18g291800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCCCATAGTTTTGAGTCATTTGATACACTGAAGGATGTTCTACACGACCACTAATTGTGTTGTAACTTTTAAGGAGAATGTCCATGACTATGACCTATTTGCACACTTTCTATGTGGTGAGGGATGATCCAACAAATAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCATCTTCACAGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCAATTTATGAGTATTTTGACACACATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTAAGTAGGAGCTATAATGATACTTACTACATAGACCCTCAGACTGTTTTGAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCGGAAGAATGGGAGGCATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGTCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCGTTTGAACTTGAAATATATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTTGGTCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAATGAATCATTCACCGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTCGAGGAGGTGCAATTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCACTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGAGCTATAAATGTTGAAAATTTACAGCTTTGCTGTGTTCAATCTCATTTTTGTTAATGTATAGATGTTTTGCCTCCCTTTAGCGATTGAACAGCGCTATAGACAGATGTATTATTTAATTTCACATAGTGAATATACCCTACAATACATAACGAGCCATGGCTAGTCCAACAGGATTATCTGTATTATCTACTGTCCTGTTTTGGGGAAAAAAATATTTTATTGTAAAATTTCTGGACCCCGACACACGAAATGGTATGTTCTCCAACAATAAATCTTTTGTTTGTGTTTTCATAGCAAAGCACTGATATGATCTTGCCGAAAAATAAAAGAATCCTCATTGCCAAACAGTGGGATTGTGGACGATTGTTTATA
Coding sequences of Glyma.18g291800
>Glyma.18g291800.1 sequence-type=CDS polypeptide=Glyma.18g291800.1.p locus=Glyma.18g291800 ID=Glyma.18g291800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATGGTGATCTCTTCTGTTCATGCCACACTATTTGCCAGGGCCTCTTTCTTTTGCCAAAGTAGTGGCCTAAGAAGCTTTAGGTCGTGTTTACCTTTCTCATCTTCAGCTGCTTCTGTCTCCACTCACAATTTTTCACGGAAGAAATGGAGGCAGCCAGTGTTGTCAGTATTGGATCTTGGCGGAGTCAACATAAGCAGAGAAGATGTGGTGAGGGATGATCCAACAAATAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCATCTTCACAGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCAATTTATGAGTATTTTGACACACATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTAAGTAGGAGCTATAATGATACTTACTACATAGACCCTCAGACTGTTTTGAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCGGAAGAATGGGAGGCATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGTCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCGTTTGAACTTGAAATATATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTTGGTCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAATGAATCATTCACCGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTCGAGGAGGTGCAATTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCACTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGA

>Glyma.18g291800.2 sequence-type=CDS polypeptide=Glyma.18g291800.2.p locus=Glyma.18g291800 ID=Glyma.18g291800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATGGTGATCTCTTCTGTTCATGCCACACTATTTGCCAGGGCCTCTTTCTTTTGCCAAAGTAGTGGCCTAAGAAGCTTTAGGTCGTGTTTACCTTTCTCATCTTCAGCTGCTTCTGTCTCCACTCACAATTTTTCACGGAAGAAATGGAGGCAGCCAGTGTTGTCAGTATTGGATCTTGGCGGAGTCAACATAAGCAGAGAAGATGTGGTGAGGGATGATCCAACAAATAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCATCTTCACAGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCAATTTATGAGTATTTTGACACACATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTAAGTAGGAGCTATAATGATACTTACTACATAGACCCTCAGACTGTTTTGAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCGGAAGAATGGGAGGCATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGTCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCGTTTGAACTTGAAATATATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTTGGTCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAATGAATCATTCACCGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTCGAGGAGGTGCAATTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCACTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGA

>Glyma.18g291800.3 sequence-type=CDS polypeptide=Glyma.18g291800.3.p locus=Glyma.18g291800 ID=Glyma.18g291800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCATGACTATGACCTATTTGCACACTTTCTATGTGGTGAGGGATGATCCAACAAATAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCATCTTCACAGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCAATTTATGAGTATTTTGACACACATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTAAGTAGGAGCTATAATGATACTTACTACATAGACCCTCAGACTGTTTTGAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCGGAAGAATGGGAGGCATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGTCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCGTTTGAACTTGAAATATATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTTGGTCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAATGAATCATTCACCGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTCGAGGAGGTGCAATTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCACTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGA
Predicted protein sequences of Glyma.18g291800
>Glyma.18g291800.1.p sequence-type=predicted peptide transcript=Glyma.18g291800.1 locus=Glyma.18g291800 ID=Glyma.18g291800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMVISSVHATLFARASFFCQSSGLRSFRSCLPFSSSAASVSTHNFSRKKWRQPVLSVLDLGGVNISREDVVRDDPTNNVPDNIFSKLGVHLHRRDQHPLGILKNAIYEYFDTHYSNKFNKFDDLCPIVSVKQNFDDVLVPEDHVSRSYNDTYYIDPQTVLRCHTSAHQAELLRTEYTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPEEWEASGMDATLFAATDLKQCLEGLARHLFGAVEMRWVDTYFPFTNPSFELEIYFKEKWLEVLGCGVTEQEILKRNGKPNNVAWAFGLGLERLAMVLFDIPDIRLFWSNDERFTSQFSKGQLGVKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGIAGDLVEEVQLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVQSKLNVVLR*

>Glyma.18g291800.2.p sequence-type=predicted peptide transcript=Glyma.18g291800.2 locus=Glyma.18g291800 ID=Glyma.18g291800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMVISSVHATLFARASFFCQSSGLRSFRSCLPFSSSAASVSTHNFSRKKWRQPVLSVLDLGGVNISREDVVRDDPTNNVPDNIFSKLGVHLHRRDQHPLGILKNAIYEYFDTHYSNKFNKFDDLCPIVSVKQNFDDVLVPEDHVSRSYNDTYYIDPQTVLRCHTSAHQAELLRTEYTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPEEWEASGMDATLFAATDLKQCLEGLARHLFGAVEMRWVDTYFPFTNPSFELEIYFKEKWLEVLGCGVTEQEILKRNGKPNNVAWAFGLGLERLAMVLFDIPDIRLFWSNDERFTSQFSKGQLGVKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGIAGDLVEEVQLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVQSKLNVVLR*

>Glyma.18g291800.3.p sequence-type=predicted peptide transcript=Glyma.18g291800.3 locus=Glyma.18g291800 ID=Glyma.18g291800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSMTMTYLHTFYVVRDDPTNNVPDNIFSKLGVHLHRRDQHPLGILKNAIYEYFDTHYSNKFNKFDDLCPIVSVKQNFDDVLVPEDHVSRSYNDTYYIDPQTVLRCHTSAHQAELLRTEYTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPEEWEASGMDATLFAATDLKQCLEGLARHLFGAVEMRWVDTYFPFTNPSFELEIYFKEKWLEVLGCGVTEQEILKRNGKPNNVAWAFGLGLERLAMVLFDIPDIRLFWSNDERFTSQFSKGQLGVKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGIAGDLVEEVQLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVQSKLNVVLR*






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