SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g290200

Feature Type:gene_model
Chromosome:Gm18
Start:56937764
stop:56943242
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g290200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04950.1AT TATA BOX ASSOCIATED FACTOR II 59 JGI N/AIEA
GO:0051090GO-bp regulation of DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0051090GO-bp regulation of sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0000124GO-cc SAGA complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005669GO-cc transcription factor TFIID complex EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0046695GO-cc SLIK (SAGA-like) complex EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
PTHR10221Panther TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 JGI N/AIEA
PF07571PFAM Protein of unknown function (DUF1546) JGI N/AIEA

Expression Patterns of Glyma.18g290200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g290200
ParalogEvidenceComments
Glyma.02g092400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g290200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g52720 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g290200
>Glyma.18g290200.2 sequence-type=transcript locus=Glyma.18g290200 ID=Glyma.18g290200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGATTTTCAGAAATATTAGTATATATTTATATGCATACAATGATGCAAACAAACAGGAACCGTTTGGCAGCTTAATGCTTCAAGATCTATTATTTGTTACTTCTTCCAATTTATCTGTAACTTGTACTCCCCTGCCCCTTTTAAGAATACTTATTTACTTATTATTTTATTTGCAGTAATTTCAGCTCCTTCTGATGTCAAAAAACATGAGCAGAAAGATGATAACCTTCCAGTTGACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAGCTGTATTTTGACAAAGTGGCCGAGCTTACTTTGAGTGAGTCTGAATCAGTTCTCTTTAAAGAGGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGGTTTCCCGTGGTTTGAATAATTATCCTCTTCTATTTGCCTTGATGCGAGTTGTTAGTAGCCTTCTGCAAAACCCTCACATCCATATTGAACCATATCTACACCAGTTGATGCCATCTGTTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTCTACGGCTAATCTGGTTGCCTCAATATGCAAAAGGTTTGGACATGTTTACAGTAATCTCCAGTCTCGGTTGACAAAAACATTGCTGAATGCATTCTTGGATCCCAAGAAGGCATTGACGCAACACTATGGTGCAATTCAGGGGTTAGGAGCACTGGGTCCCAACGTGGTTCGCCTTCTTTTGCTGCCGAACCTTGAAACATATATGCGACTTCTTGAACCAGAGATGCTTCTTGAGATGCAGAAAAATGAAATGAAAAGGCATGAAGCTTGGCTGGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTTCCATCTCCTCCCCTTCATGCTGTCTGGAAGACCAATGCAAAAGTTCTTACTTCAACTCATAAACGCAAGGCAAGCCCTGAGCAATTGGAACAGCAGCCACCTTTGAAAAAAGCTGCTACGGATGGTGAGATTGGTGTGGACCTAATGAATCACGAGCAAGAGGAGGCAGGGACTCAAGCTTCTTCAGCCGATTCAATAATTGGCTCATCATCATCTAACACACAGATGAAAAATGAGACTACTTTAGATGGAGAAGTTAGAAGTAACGGGGGTGATACTCAGGCATTGAAGACATCTGCTGCTCTCACCCAGGTTTGGAAGGACGAGCTTAACTCAGGACGTACCCTGGTATCACTGTTTGAGTTGTTTGGTGAAGGAATTCTCTCCTTCATTCAGGCTCCTGAGATGTATATGTTCTTGTAACTTAGGGAGTATCATAGTAATTTGATGGATAGAACTTGGATAACCCATAGACCATTATTTCGAAAACAAACTAAAATTCCTCCATGGTATGCCAAGTTCATGTTGATGTTTTTGATGTTGGTGGTGGGATATTGCTTATCGGGTTGAGTGACGGGAAATGTTATGTTTGCGTAGCATGTTAAAATCCTTATTGCAGCCTAT

>Glyma.18g290200.3 sequence-type=transcript locus=Glyma.18g290200 ID=Glyma.18g290200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGATTTTCAGAAATATTAGTATATATTTATATGCATACAATGATGCAAACAAACAGGAACCGTTTGGCAGCTTAATGCTTCAAGATCTATTATTTGTTACTTCTTCCAATTTATCTGTAACTTGTACTCCCCTGCCCCTTTTAAGAATACTTATTTACTTATTATTTTATTTGCAGTAATTTCAGCTCCTTCTGATGTCAAAAAACATGAGCAGAAAGATGATAACCTTCCAGTTGACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAGCTGTATTTTGACAAAGTGGCCGAGCTTACTTTGAGTGAGTCTGAATCAGTTCTCTTTAAAGAGGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGGTTTCCCGTGGTTTGAATAATTATCCTCTTCTATTTGCCTTGATGCGAGTTGTTAGTAGCCTTCTGCAAAACCCTCACATCCATATTGAACCATATCTACACCAGTTGATGCCATCTGTTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTCTACGGCTAATCTGGTTGCCTCAATATGCAAAAGGTTTGGACATGTTTACAGTAATCTCCAGTCTCGGTTGACAAAAACATTGCTGAATGCATTCTTGGATCCCAAGAAGGCATTGACGCAACACTATGGTGCAATTCAGGGGTTAGGAGCACTGGGTCCCAACGTGGTTCGCCTTCTTTTGCTGCCGAACCTTGAAACATATATGCGACTTCTTGAACCAGAGATGCTTCTTGAGATGCAGAAAAATGAAATGAAAAGGCATGAAGCTTGGCTGGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTTCCATCTCCTCCCCTTCATGCTGTCTGGAAGACCAATGCAAAAGTTCTTACTTCAACTCATCAGTGTTGTGATTATTTAATAAAGTTTGCAGTTGGTCCAATTGAGACGTTCGCATGTCTGTTCTGTGGTTTTGTCAAACCAAAGTATCAATTATCAGCTTTGTACTTCTCCATGATTTGTTTGTACATGATTGATTATTAAGATAAACGCAAGGCAAGCCCTGAGCAATTGGAACAGCAGCCACCTTTGAAAAAAGCTGCTACGGATGGTGAGATTGGTGTGGACCTAATGAATCACGAGCAAGAGGAGGCAGGGACTCAAGCTTCTTCAGCCGATTCAATAATTGGCTCATCATCATCTAACACACAGATGAAAAATGAGACTACTTTAGATGGAGAAGTTAGAAGTAACGGGGGTGATACTCAGGCATTGAAGACATCTGCTGCTCTCACCCAGGTTTGGAAGGACGAGCTTAACTCAGGACGTACCCTGGTATCACTGTTTGAGTTGTTTGGTGAAGGAATTCTCTCCTTCATTCAGGCTCCTGAGATGTATATGTTCTTGTAACTTAGGGAGTATCATAGTAATTTGATGGATAGAACTTGGATAACCCATAGACCATTATTTCGAAAACAAACTAAAATTCCTCCATGGTATGCCAAGTTCATGTTGATGTTTTTGATGTTGGTGGTGGGATATTGCTTATCGGGTTGAGTGACGGGAAATGTTATGTTTGCGTAGCATGTTAAAATCCTTATTGCAGCCTAT
Coding sequences of Glyma.18g290200
>Glyma.18g290200.1 sequence-type=CDS polypeptide=Glyma.18g290200.1.p locus=Glyma.18g290200 ID=Glyma.18g290200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACGATCATCAAGGCATATTGACCGGCTAATTTCAGCTCCTTCTGATGTCAAAAAACATGAGCAGAAAGATGATAACCTTCCAGTTGACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAGCTGTATTTTGACAAAGTGGCCGAGCTTACTTTGAGTGAGTCTGAATCAGTTCTCTTTAAAGAGGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGGTTTCCCGTGGTTTGAATAATTATCCTCTTCTATTTGCCTTGATGCGAGTTGTTAGTAGCCTTCTGCAAAACCCTCACATCCATATTGAACCATATCTACACCAGTTGATGCCATCTGTTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTCTACGGCTAATCTGGTTGCCTCAATATGCAAAAGGTTTGGACATGTTTACAGTAATCTCCAGTCTCGGTTGACAAAAACATTGCTGAATGCATTCTTGGATCCCAAGAAGGCATTGACGCAACACTATGGTGCAATTCAGGGGTTAGGAGCACTGGGTCCCAACGTGGTTCGCCTTCTTTTGCTGCCGAACCTTGAAACATATATGCGACTTCTTGAACCAGAGATGCTTCTTGAGATGCAGAAAAATGAAATGAAAAGGCATGAAGCTTGGCTGGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTTCCATCTCCTCCCCTTCATGCTGTCTGGAAGACCAATGCAAAAGTTCTTACTTCAACTCATAAACGCAAGGCAAGCCCTGAGCAATTGGAACAGCAGCCACCTTTGAAAAAAGCTGCTACGGATGGTGAGATTGGTGTGGACCTAATGAATCACGAGCAAGAGGAGGCAGGGACTCAAGCTTCTTCAGCCGATTCAATAATTGGCTCATCATCATCTAACACACAGATGAAAAATGAGACTACTTTAGATGGAGAAGTTAGAAGTAACGGGGGTGATACTCAGGCATTGAAGACATCTGCTGCTCTCACCCAGGTTTGGAAGGACGAGCTTAACTCAGGACGTACCCTGGTATCACTGTTTGAGTTGTTTGGTGAAGGAATTCTCTCCTTCATTCAGGCTCCTGAGATGTATATGTTCTTGTAA

>Glyma.18g290200.2 sequence-type=CDS polypeptide=Glyma.18g290200.2.p locus=Glyma.18g290200 ID=Glyma.18g290200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGAGTTGTTAGTAGCCTTCTGCAAAACCCTCACATCCATATTGAACCATATCTACACCAGTTGATGCCATCTGTTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTCTACGGCTAATCTGGTTGCCTCAATATGCAAAAGGTTTGGACATGTTTACAGTAATCTCCAGTCTCGGTTGACAAAAACATTGCTGAATGCATTCTTGGATCCCAAGAAGGCATTGACGCAACACTATGGTGCAATTCAGGGGTTAGGAGCACTGGGTCCCAACGTGGTTCGCCTTCTTTTGCTGCCGAACCTTGAAACATATATGCGACTTCTTGAACCAGAGATGCTTCTTGAGATGCAGAAAAATGAAATGAAAAGGCATGAAGCTTGGCTGGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTTCCATCTCCTCCCCTTCATGCTGTCTGGAAGACCAATGCAAAAGTTCTTACTTCAACTCATAAACGCAAGGCAAGCCCTGAGCAATTGGAACAGCAGCCACCTTTGAAAAAAGCTGCTACGGATGGTGAGATTGGTGTGGACCTAATGAATCACGAGCAAGAGGAGGCAGGGACTCAAGCTTCTTCAGCCGATTCAATAATTGGCTCATCATCATCTAACACACAGATGAAAAATGAGACTACTTTAGATGGAGAAGTTAGAAGTAACGGGGGTGATACTCAGGCATTGAAGACATCTGCTGCTCTCACCCAGGTTTGGAAGGACGAGCTTAACTCAGGACGTACCCTGGTATCACTGTTTGAGTTGTTTGGTGAAGGAATTCTCTCCTTCATTCAGGCTCCTGAGATGTATATGTTCTTGTAA

>Glyma.18g290200.3 sequence-type=CDS polypeptide=Glyma.18g290200.3.p locus=Glyma.18g290200 ID=Glyma.18g290200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGAGTTGTTAGTAGCCTTCTGCAAAACCCTCACATCCATATTGAACCATATCTACACCAGTTGATGCCATCTGTTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTCTACGGCTAATCTGGTTGCCTCAATATGCAAAAGGTTTGGACATGTTTACAGTAATCTCCAGTCTCGGTTGACAAAAACATTGCTGAATGCATTCTTGGATCCCAAGAAGGCATTGACGCAACACTATGGTGCAATTCAGGGGTTAGGAGCACTGGGTCCCAACGTGGTTCGCCTTCTTTTGCTGCCGAACCTTGAAACATATATGCGACTTCTTGAACCAGAGATGCTTCTTGAGATGCAGAAAAATGAAATGAAAAGGCATGAAGCTTGGCTGGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTTCCATCTCCTCCCCTTCATGCTGTCTGGAAGACCAATGCAAAAGTTCTTACTTCAACTCATCAGTGTTGTGATTATTTAATAAAGTTTGCAGTTGGTCCAATTGAGACGTTCGCATGTCTGTTCTGTGGTTTTGTCAAACCAAAGTATCAATTATCAGCTTTGTACTTCTCCATGATTTGTTTGTACATGATTGATTATTAA
Predicted protein sequences of Glyma.18g290200
>Glyma.18g290200.1.p sequence-type=predicted peptide transcript=Glyma.18g290200.1 locus=Glyma.18g290200 ID=Glyma.18g290200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MERSSRHIDRLISAPSDVKKHEQKDDNLPVDIKLPVKHVLSRELQLYFDKVAELTLSESESVLFKEALVSLATDSGLHPLVPYFTCFIADEVSRGLNNYPLLFALMRVVSSLLQNPHIHIEPYLHQLMPSVVTCLVAKRLGSRLADNHWELRDSTANLVASICKRFGHVYSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYMRLLEPEMLLEMQKNEMKRHEAWLVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNAKVLTSTHKRKASPEQLEQQPPLKKAATDGEIGVDLMNHEQEEAGTQASSADSIIGSSSSNTQMKNETTLDGEVRSNGGDTQALKTSAALTQVWKDELNSGRTLVSLFELFGEGILSFIQAPEMYMFL*

>Glyma.18g290200.2.p sequence-type=predicted peptide transcript=Glyma.18g290200.2 locus=Glyma.18g290200 ID=Glyma.18g290200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRVVSSLLQNPHIHIEPYLHQLMPSVVTCLVAKRLGSRLADNHWELRDSTANLVASICKRFGHVYSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYMRLLEPEMLLEMQKNEMKRHEAWLVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNAKVLTSTHKRKASPEQLEQQPPLKKAATDGEIGVDLMNHEQEEAGTQASSADSIIGSSSSNTQMKNETTLDGEVRSNGGDTQALKTSAALTQVWKDELNSGRTLVSLFELFGEGILSFIQAPEMYMFL*

>Glyma.18g290200.3.p sequence-type=predicted peptide transcript=Glyma.18g290200.3 locus=Glyma.18g290200 ID=Glyma.18g290200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRVVSSLLQNPHIHIEPYLHQLMPSVVTCLVAKRLGSRLADNHWELRDSTANLVASICKRFGHVYSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYMRLLEPEMLLEMQKNEMKRHEAWLVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNAKVLTSTHQCCDYLIKFAVGPIETFACLFCGFVKPKYQLSALYFSMICLYMIDY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo