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Report for Sequence Feature Glyma.18g288200

Feature Type:gene_model
Chromosome:Gm18
Start:56795210
stop:56796076
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g288200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57450.1AT homolog of X-ray repair cross complementing 3 (XRCC3) JGI N/AIEA
GO:0000707GO-bp meiotic DNA recombinase assembly EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006312GO-bp mitotic recombination EnsemblGenomesN/AIEA
GO:0007131GO-bp reciprocal meiotic recombination EnsemblGenomesN/AIEA
GO:0010212GO-bp response to ionizing radiation EnsemblGenomesN/AIEA
GO:0042148GO-bp strand invasion EnsemblGenomesN/AIEA
GO:0005657GO-cc replication fork EnsemblGenomesN/AIEA
GO:0033063GO-cc Rad51B-Rad51C-Rad51D-XRCC2 complex EnsemblGenomesN/AIEA
GO:0000150GO-mf recombinase activity EnsemblGenomesN/AIEA
GO:0000400GO-mf four-way junction DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003690GO-mf double-stranded DNA binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
GO:0004520GO-mf endodeoxyribonuclease activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0008094GO-mf DNA-dependent ATPase activity EnsemblGenomesN/AIEA
KOG1564 KOG DNA repair protein RHP57 JGI N/AIEA
PTHR22942Panther RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER JGI N/AIEA
PTHR22942:SF24Panther DNA REPAIR PROTEIN XRCC3 JGI N/AIEA
PF08423PFAM Rad51 JGI N/AIEA
GN7V-64698SoyCyc9-rxn ATP diphosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g288200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g288200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g52510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g288200
>Glyma.18g288200.1 sequence-type=CDS polypeptide=Glyma.18g288200.1.p locus=Glyma.18g288200 ID=Glyma.18g288200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGGCAGAGAACCTATTGCAATTGCAACACCGCACCCAGAAGTGCACCCTGGGCTGTCCCGTACTCGATCGCTGCCTCGCCGGCGGCGTCCCCTGCGCCTCCGTCACCGAGTTCGTCGGCGAGAGCGGTTGCGGCAAGACGCAGCTCTGCCTCCAACTCGCCCTCTCCGCCCAGCTCCCCCCCTCTCACGGCGGTCTCTCCGCCTCCTCCATCTTCATCCACACCGAGTTCCCCTTCCCCTTCCGCCGCCTCCGCCACCTCTCACGCGCCTTCCGCGCCTCCCACCCCGACCTCCCTTGCTCCGACCCCTGCGACCGCGTCTTCCTACGCGCCGTCCACTCCGCGCACGAATTACTCAACCTAATCCCAACCATCGAGACTTTCCTCTTGCACTCGAAATCGCCGTGGCGGCCGGTGAGAATCATCGTGATCGATTCCATCGCCGCGCTTTTCCGCTCCGATTTCGAGAACACCGGATCGGATCTCCGGCGGAGGTCGTCGCTGTTTTTCGGAATCTCGGGGGGATTGCGGCAGTTGGCGAAGAGGTTTGGGATTGCGGTGGTGGTGACGAACCAGGTTGTGGATTTGATCGGTGATGGTGACGTGAGCTTTGGGAGTTTGGGTAATGGGCTTTATTCTTCGGGCCGAAGGGTTTGTCCTGCGTTGGGCCTGGCTTGGGCCCATTGTGTTAACTCGAGACTGTTTTTGTCGAAGGATGAGGATGAGCCGCCGGTGAAGACAAGGAAAATGAGAGTTGTGTTTGCTCCTCATTTGCCGCACTCTTCTTGCGAGTATGTTATTAAAGGGGAAGGCGTTTTCGGCGTGGAGATGATGCAACACCGAGAAGAAGAGATAAATCTTTGA
Predicted protein sequences of Glyma.18g288200
>Glyma.18g288200.1.p sequence-type=predicted peptide transcript=Glyma.18g288200.1 locus=Glyma.18g288200 ID=Glyma.18g288200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRAENLLQLQHRTQKCTLGCPVLDRCLAGGVPCASVTEFVGESGCGKTQLCLQLALSAQLPPSHGGLSASSIFIHTEFPFPFRRLRHLSRAFRASHPDLPCSDPCDRVFLRAVHSAHELLNLIPTIETFLLHSKSPWRPVRIIVIDSIAALFRSDFENTGSDLRRRSSLFFGISGGLRQLAKRFGIAVVVTNQVVDLIGDGDVSFGSLGNGLYSSGRRVCPALGLAWAHCVNSRLFLSKDEDEPPVKTRKMRVVFAPHLPHSSCEYVIKGEGVFGVEMMQHREEEINL*






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