Glyma.18g287500

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g287500

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56749390
stop:	56753241
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g287500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12770.1	AT	mitochondrial editing factor 22	JGI	N/A	IEA
GO:0080156	GO-bp	mitochondrial mRNA modification	EnsemblGenomes	N/A	IEA
GO:0090305	GO-bp	nucleic acid phosphodiester bond hydrolysis	EnsemblGenomes	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0004519	GO-mf	endonuclease activity	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
PTHR24015	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24015:SF145	Panther		JGI	N/A	IEA
PF01535	PFAM	PPR repeat	JGI	N/A	IEA

Proteins Associated with Glyma.18g287500

Locus	Gene Symbol	Protein Name
	PPR170	Psudo-Response Regulator gene 170

Expression Patterns of Glyma.18g287500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g287500

Paralog	Evidence	Comments
Glyma.02g094200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g287500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g52440	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g287500

Limit To All Plant Sequences

>Glyma.18g287500.2 sequence-type=transcript locus=Glyma.18g287500 ID=Glyma.18g287500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAAATCTCCCCAAACCAAACGAACAACACAACCCATTTGGATCTCTCTTCTTTCTTTGATCTCCAAATACACCCTTTTCGTTTTTTCAACACTTCTCTCCACAGAGAAAAGGAGAAAAGTGCCGATCACGTGTCTTGTGTGGTCATCGATGGCAGCAGCACCTGCGATTGAATAATATTATTTGCTTAATTGTCTTTTTTCTTTTTATTTGGGAATTCAACTGTAGAGTGGGCTTCTGTTGTTGAAGGTTGGGAAAGAGAAACCAGAACTAAATTGAGCTTCAAGAAACTGGAAACCAGAAACTGAGTAGGATAAATCTCCATTAATCTAATTGAATTGCTTTTGTTGATATGAGTTCAGATTCTGCAAACAAACATTGAAAGATAATGGACACAATTCTATGGCTTCGAAACTCCTCAGCATATCTCCCCTTGCAACCAAAAACCAAAAGGTTACAACTCCTCAAATACCCAGATGCTTTGTCCTCAAGTTTGTCAAATATCTTTGTTTTTCATCAGCTCTTCACCCTGAACACTTTGTTAACCATGACCATTGCTTCAATTCAGACTCATTCTATGCATCTCTTATTGATAATTCTACCCACAAGAGACACCTTGATCAAATACATAACCGGTTAGTTATCTCCGGGCTGCAACATAATGGGTTTCTCATGACCAAACTGGTTAATGGGAGTTCAAATCTTGGACAAATTTGTTATGCTCGCAAGCTGTTTGATGAATTTTGTTACCCTGACGTGTTTATGTGGAATGCTATCATTAGGAGTTATTCGAGGAACAATATGTACAGGGACACCGTTGAAATGTATAGATGGATGAGATGGACAGGAGTGCATCCAGATGGATTCACTTTTCCTTATGTACTAAAAGCTTGTACTGAGTTGTTAGATTTTGGTTTGAGTTGCATAATTCATGGGCAGATAATCAAATATGGCTTTGGGTCAGATGTGTTTGTGCAGAATGGCCTTGTTGCATTGTATGCTAAATGTGGCCATATTGGTGTGGCAAAAGTGGTGTTTGATGGGTTATACCATAGAACAATTGTTTCATGGACTTCCATCATTTCTGGATATGCACAGAATGGGAAAGCTGTGGAAGCATTGAGAATGTTCAGTCAAATGAGAAATAATGGTGTGAAACCAGATTGGATTGCTCTGGTAAGCATTCTGAGGGCGTATACTGATGTAGATGACTTAGAGCAAGGGAGATCTATTCATGGCTTTGTCATCAAAATGGGTCTTGAAGATGAGCCTGCTTTGCTTATCTCTCTTACAGCTTTTTATGCTAAATGTGGGCTGGTGACAGTTGCAAAATCTTTCTTTGATCAAATGAAGACAACAAACGTGATTATGTGGAATGCAATGATATCTGGCTATGCAAAGAATGGCCATGCTGAGGAAGCAGTAAATCTATTCCATTACATGATCTCGAGAAATATTAAACCAGATTCTGTCACTGTGAGGTCTGCAGTCTTAGCTAGTGCGCAAGTTGGTTCCCTCGAATTAGCACAATGGATGGATGACTATGTTAGCAAGAGTAACTATGGAAGTGACATTTTTGTTAATACTTCTCTCATTGATATGTATGCAAAATGTGGAAGTGTGGAATTTGCTCGAAGGGTATTTGATCGTAATTCTGATAAGGATGTTGTTATGTGGAGTGCCATGATTATGGGATATGGATTGCATGGTCAAGGATGGGAAGCCATTAATCTTTACCATGTGATGAAGCAAGCAGGGGTGTTCCCAAATGATGTCACCTTTATTGGGCTTCTCACAGCATGCAATCATTCTGGCCTTGTAAAAGAGGGATGGGAGCTATTCCATTGCATGAAAGACTTTGAAATTGTGCCTCGTAATGAGCATTATTCTTGTGTTGTAGATCTCTTGGGACGAGCAGGTTATTTGGGTGAGGCTTGTGCATTTATAATGAAAATTCCCATTGAACCTGGTGTAAGTGTATGGGGGGCACTTTTAAGTGCATGCAAGATCTATCGCTGTGTAACATTGGGAGAATATGCTGCAAACAAGCTATTCTCATTGGATCCATACAATACAGGGCATTATGTACAACTCTCTAATCTCTATGCTTCCTCCTGCTTGTGGGATTGTGTTGCACATGTTCGAGTTCTAATGAGGGAGAAAGGATTGAATAAGGACCTTGGTTACAGTGTAATTGAAATAAATGGGAAGCTACAGGCATTTCATGTAGGGGACAAGTCACACCCAATGGCTAAGGAAATATTCGATGAGCTTCAGAGATTAGAAAGAAGGTTAAAGGAGGTTGGGTTTGTCCCATATACAGAATCTGTTTTGCATGATCTGAATTATGAAGAGAAGGAGGAGAATCTTAGTTTTCATAGTGAGAGGATAGCTGTTGCTTATGGTCTTATTAGTACTGCTCCTGGAACTACACTTAGAATAACAAAGAATCTTCGAGCATGTGTGAACTGTCATTCTGCCATAAAGCTTATATCAAAGCTTGTTGAGAGGGAAATAATTGTAAGGGATGCAAATCGGTTTCATCATTTTAAAGATGGTTTGTGTTCATGTGGAGACTATTGGTAAGAAGAATAACTCAAACTCATGCCAGCAGTTGCTGTTAGCTGACACTTCCCCAGATTAAATTGACTGCTTGCTAGTTTTGTTAAATAGCATACTGATCTTGGATCTCTTGCATTAACTTTTATCAGTAGAGACAACATGTACATTTTGGTGATCAATCACATCTTTTGATTGTAGTCTGCTGATATATGTTCTCAGATTATCAAGATTAACCAACCCGACCAGGCAGCCACAGGGGTTAGCTGCTTAAAAATCAGCTTGCTGTTTCATGAAAAAAAAGCAGAATCTGTAGTTAGAGGGTGCAGATTCAACAGTTGCCCGCATTGGGTTCTATAGTTATTTTAATGACTAAGTGGGAGCATGTATTTGTCCTTGTACTTCCCAACTGAAAAGATTATGTTTTGAAGACAGTGTTATAAATTTTCCGCTTACATAGTTGTCGGATTTGTTGTGATGAGTTCATTTGCTCAGCTCTCTCCACTTTCATTTTGT

Coding sequences of Glyma.18g287500

Limit To All Plant Sequences

>Glyma.18g287500.1 sequence-type=CDS polypeptide=Glyma.18g287500.1.p locus=Glyma.18g287500 ID=Glyma.18g287500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCGAAACTCCTCAGCATATCTCCCCTTGCAACCAAAAACCAAAAGGTTACAACTCCTCAAATACCCAGATGCTTTGTCCTCAAGTTTGTCAAATATCTTTGTTTTTCATCAGCTCTTCACCCTGAACACTTTGTTAACCATGACCATTGCTTCAATTCAGACTCATTCTATGCATCTCTTATTGATAATTCTACCCACAAGAGACACCTTGATCAAATACATAACCGGTTAGTTATCTCCGGGCTGCAACATAATGGGTTTCTCATGACCAAACTGGTTAATGGGAGTTCAAATCTTGGACAAATTTGTTATGCTCGCAAGCTGTTTGATGAATTTTGTTACCCTGACGTGTTTATGTGGAATGCTATCATTAGGAGTTATTCGAGGAACAATATGTACAGGGACACCGTTGAAATGTATAGATGGATGAGATGGACAGGAGTGCATCCAGATGGATTCACTTTTCCTTATGTACTAAAAGCTTGTACTGAGTTGTTAGATTTTGGTTTGAGTTGCATAATTCATGGGCAGATAATCAAATATGGCTTTGGGTCAGATGTGTTTGTGCAGAATGGCCTTGTTGCATTGTATGCTAAATGTGGCCATATTGGTGTGGCAAAAGTGGTGTTTGATGGGTTATACCATAGAACAATTGTTTCATGGACTTCCATCATTTCTGGATATGCACAGAATGGGAAAGCTGTGGAAGCATTGAGAATGTTCAGTCAAATGAGAAATAATGGTGTGAAACCAGATTGGATTGCTCTGGTAAGCATTCTGAGGGCGTATACTGATGTAGATGACTTAGAGCAAGGGAGATCTATTCATGGCTTTGTCATCAAAATGGGTCTTGAAGATGAGCCTGCTTTGCTTATCTCTCTTACAGCTTTTTATGCTAAATGTGGGCTGGTGACAGTTGCAAAATCTTTCTTTGATCAAATGAAGACAACAAACGTGATTATGTGGAATGCAATGATATCTGGCTATGCAAAGAATGGCCATGCTGAGGAAGCAGTAAATCTATTCCATTACATGATCTCGAGAAATATTAAACCAGATTCTGTCACTGTGAGGTCTGCAGTCTTAGCTAGTGCGCAAGTTGGTTCCCTCGAATTAGCACAATGGATGGATGACTATGTTAGCAAGAGTAACTATGGAAGTGACATTTTTGTTAATACTTCTCTCATTGATATGTATGCAAAATGTGGAAGTGTGGAATTTGCTCGAAGGGTATTTGATCGTAATTCTGATAAGGATGTTGTTATGTGGAGTGCCATGATTATGGGATATGGATTGCATGGTCAAGGATGGGAAGCCATTAATCTTTACCATGTGATGAAGCAAGCAGGGGTGTTCCCAAATGATGTCACCTTTATTGGGCTTCTCACAGCATGCAATCATTCTGGCCTTGTAAAAGAGGGATGGGAGCTATTCCATTGCATGAAAGACTTTGAAATTGTGCCTCGTAATGAGCATTATTCTTGTGTTGTAGATCTCTTGGGACGAGCAGGTTATTTGGGTGAGGCTTGTGCATTTATAATGAAAATTCCCATTGAACCTGGTGTAAGTGTATGGGGGGCACTTTTAAGTGCATGCAAGATCTATCGCTGTGTAACATTGGGAGAATATGCTGCAAACAAGCTATTCTCATTGGATCCATACAATACAGGGCATTATGTACAACTCTCTAATCTCTATGCTTCCTCCTGCTTGTGGGATTGTGTTGCACATGTTCGAGTTCTAATGAGGGAGAAAGGATTGAATAAGGACCTTGGTTACAGTGTAATTGAAATAAATGGGAAGCTACAGGCATTTCATGTAGGGGACAAGTCACACCCAATGGCTAAGGAAATATTCGATGAGCTTCAGAGATTAGAAAGAAGGTTAAAGGAGGTTGGGTTTGTCCCATATACAGAATCTGTTTTGCATGATCTGAATTATGAAGAGAAGGAGGAGAATCTTAGTTTTCATAGTGAGAGGATAGCTGTTGCTTATGGTCTTATTAGTACTGCTCCTGGAACTACACTTAGAATAACAAAGAATCTTCGAGCATGTGTGAACTGTCATTCTGCCATAAAGCTTATATCAAAGCTTGTTGAGAGGGAAATAATTGTAAGGGATGCAAATCGGTTTCATCATTTTAAAGATGGTTTGTGTTCATGTGGAGACTATTGGTAA

>Glyma.18g287500.2 sequence-type=CDS polypeptide=Glyma.18g287500.2.p locus=Glyma.18g287500 ID=Glyma.18g287500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCGAAACTCCTCAGCATATCTCCCCTTGCAACCAAAAACCAAAAGGTTACAACTCCTCAAATACCCAGATGCTTTGTCCTCAAGTTTGTCAAATATCTTTGTTTTTCATCAGCTCTTCACCCTGAACACTTTGTTAACCATGACCATTGCTTCAATTCAGACTCATTCTATGCATCTCTTATTGATAATTCTACCCACAAGAGACACCTTGATCAAATACATAACCGGTTAGTTATCTCCGGGCTGCAACATAATGGGTTTCTCATGACCAAACTGGTTAATGGGAGTTCAAATCTTGGACAAATTTGTTATGCTCGCAAGCTGTTTGATGAATTTTGTTACCCTGACGTGTTTATGTGGAATGCTATCATTAGGAGTTATTCGAGGAACAATATGTACAGGGACACCGTTGAAATGTATAGATGGATGAGATGGACAGGAGTGCATCCAGATGGATTCACTTTTCCTTATGTACTAAAAGCTTGTACTGAGTTGTTAGATTTTGGTTTGAGTTGCATAATTCATGGGCAGATAATCAAATATGGCTTTGGGTCAGATGTGTTTGTGCAGAATGGCCTTGTTGCATTGTATGCTAAATGTGGCCATATTGGTGTGGCAAAAGTGGTGTTTGATGGGTTATACCATAGAACAATTGTTTCATGGACTTCCATCATTTCTGGATATGCACAGAATGGGAAAGCTGTGGAAGCATTGAGAATGTTCAGTCAAATGAGAAATAATGGTGTGAAACCAGATTGGATTGCTCTGGTAAGCATTCTGAGGGCGTATACTGATGTAGATGACTTAGAGCAAGGGAGATCTATTCATGGCTTTGTCATCAAAATGGGTCTTGAAGATGAGCCTGCTTTGCTTATCTCTCTTACAGCTTTTTATGCTAAATGTGGGCTGGTGACAGTTGCAAAATCTTTCTTTGATCAAATGAAGACAACAAACGTGATTATGTGGAATGCAATGATATCTGGCTATGCAAAGAATGGCCATGCTGAGGAAGCAGTAAATCTATTCCATTACATGATCTCGAGAAATATTAAACCAGATTCTGTCACTGTGAGGTCTGCAGTCTTAGCTAGTGCGCAAGTTGGTTCCCTCGAATTAGCACAATGGATGGATGACTATGTTAGCAAGAGTAACTATGGAAGTGACATTTTTGTTAATACTTCTCTCATTGATATGTATGCAAAATGTGGAAGTGTGGAATTTGCTCGAAGGGTATTTGATCGTAATTCTGATAAGGATGTTGTTATGTGGAGTGCCATGATTATGGGATATGGATTGCATGGTCAAGGATGGGAAGCCATTAATCTTTACCATGTGATGAAGCAAGCAGGGGTGTTCCCAAATGATGTCACCTTTATTGGGCTTCTCACAGCATGCAATCATTCTGGCCTTGTAAAAGAGGGATGGGAGCTATTCCATTGCATGAAAGACTTTGAAATTGTGCCTCGTAATGAGCATTATTCTTGTGTTGTAGATCTCTTGGGACGAGCAGGTTATTTGGGTGAGGCTTGTGCATTTATAATGAAAATTCCCATTGAACCTGGTGTAAGTGTATGGGGGGCACTTTTAAGTGCATGCAAGATCTATCGCTGTGTAACATTGGGAGAATATGCTGCAAACAAGCTATTCTCATTGGATCCATACAATACAGGGCATTATGTACAACTCTCTAATCTCTATGCTTCCTCCTGCTTGTGGGATTGTGTTGCACATGTTCGAGTTCTAATGAGGGAGAAAGGATTGAATAAGGACCTTGGTTACAGTGTAATTGAAATAAATGGGAAGCTACAGGCATTTCATGTAGGGGACAAGTCACACCCAATGGCTAAGGAAATATTCGATGAGCTTCAGAGATTAGAAAGAAGGTTAAAGGAGGTTGGGTTTGTCCCATATACAGAATCTGTTTTGCATGATCTGAATTATGAAGAGAAGGAGGAGAATCTTAGTTTTCATAGTGAGAGGATAGCTGTTGCTTATGGTCTTATTAGTACTGCTCCTGGAACTACACTTAGAATAACAAAGAATCTTCGAGCATGTGTGAACTGTCATTCTGCCATAAAGCTTATATCAAAGCTTGTTGAGAGGGAAATAATTGTAAGGGATGCAAATCGGTTTCATCATTTTAAAGATGGTTTGTGTTCATGTGGAGACTATTGGTAA

Predicted protein sequences of Glyma.18g287500

Limit To All Plant Sequences

>Glyma.18g287500.1.p sequence-type=predicted peptide transcript=Glyma.18g287500.1 locus=Glyma.18g287500 ID=Glyma.18g287500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASKLLSISPLATKNQKVTTPQIPRCFVLKFVKYLCFSSALHPEHFVNHDHCFNSDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW*

>Glyma.18g287500.2.p sequence-type=predicted peptide transcript=Glyma.18g287500.2 locus=Glyma.18g287500 ID=Glyma.18g287500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASKLLSISPLATKNQKVTTPQIPRCFVLKFVKYLCFSSALHPEHFVNHDHCFNSDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW*

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