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Report for Sequence Feature Glyma.18g284200

Feature Type:gene_model
Chromosome:Gm18
Start:56482736
stop:56486831
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g284200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10840.1AT translation initiation factor 3 subunit H1 JGI N/AIEA
GO:0001731GO-bp formation of translation preinitiation complex EnsemblGenomesN/AIEA
GO:0001732GO-bp formation of cytoplasmic translation initiation complex EnsemblGenomesN/AIEA
GO:0002183GO-bp cytoplasmic translational initiation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005852GO-cc eukaryotic translation initiation factor 3 complex EnsemblGenomesN/AIEA
GO:0016282GO-cc eukaryotic 43S preinitiation complex EnsemblGenomesN/AIEA
GO:0033290GO-cc eukaryotic 48S preinitiation complex EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1560 KOG Translation initiation factor 3, subunit h (eIF-3h) JGI N/AIEA
PTHR10410Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED JGI N/AIEA
PTHR10410:SF3Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H JGI N/AIEA
PF01398PFAM JAB1/Mov34/MPN/PAD-1 ubiquitin protease JGI N/AIEA

Expression Patterns of Glyma.18g284200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g284200
ParalogEvidenceComments
Glyma.02g097300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g284200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g52060 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g284200
>Glyma.18g284200.2 sequence-type=transcript locus=Glyma.18g284200 ID=Glyma.18g284200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
tttctgtattctgtctctgtttctccttatatttatatttTAATTTTAAAAAATAAAAATTGGGCTAACTGTAATTTTAGGTGTGGACTATTTGAGCCCAACTCTAAGCAAAACCCCTTCTTCTTCCTCTTGCTCCGGCGTTAGGGTTTCTTCCTCTTTCAAACTCCATCGCAGATTCTTCGCTCCTTTCCATTGATTCAAAACATGGCTACCACTCCTGCCAGATCTTTCCTCCAAGTCGCCGCAACGGAGGAGGCTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACAGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCATTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTGATGGAGAGGAATACTGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGGTTCTTTTAGGTCTTCATTTATTTTGTGTGCTGTTTTAGAATGTATTTGACTGAAATTTCTTCTATTTTAGTTCCAATTCTATTATCGAAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGACGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCAGAGGAAGATCCTTCAAATCCCATTTTCAAGCCGCTCCCAGAGCCTTCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGATAAGGCAATTTTTGTTTGTCATTCTGATGGTTTGATCCAATTTCTTTTCCATATAGGATGAGAATTTTATGGCGAATTTGGTAGTATATTAGAGGATCACGCTTGTAAGGCGACGTAATTTTTGTTTATTTTATGAAACCCATCCAATTGTATTGAGTATAATCTGTTATTGAATATTTAGAGATACATGCAGTGCCACTTGCTGCTTTTTATCTATGTTACAAAATTTGGCATCCAGTTATATTAACCAACTACTTTAGTT
Coding sequences of Glyma.18g284200
>Glyma.18g284200.1 sequence-type=CDS polypeptide=Glyma.18g284200.1.p locus=Glyma.18g284200 ID=Glyma.18g284200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCACTCCTGCCAGATCTTTCCTCCAAGTCGCCGCAACGGAGGAGGCTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACAGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCATTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTGATGGAGAGGAATACTGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCTATTATCGAAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGACGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCAGAGGAAGATCCTTCAAATCCCATTTTCAAGCCGCTCCCAGAGCCTTCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA

>Glyma.18g284200.2 sequence-type=CDS polypeptide=Glyma.18g284200.2.p locus=Glyma.18g284200 ID=Glyma.18g284200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCACTCCTGCCAGATCTTTCCTCCAAGTCGCCGCAACGGAGGAGGCTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACAGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCATTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTGATGGAGAGGAATACTGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGGTTCTTTTAGGTCTTCATTTATTTTGTGTGCTGTTTTAG
Predicted protein sequences of Glyma.18g284200
>Glyma.18g284200.1.p sequence-type=predicted peptide transcript=Glyma.18g284200.1 locus=Glyma.18g284200 ID=Glyma.18g284200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED*

>Glyma.18g284200.2.p sequence-type=predicted peptide transcript=Glyma.18g284200.2 locus=Glyma.18g284200 ID=Glyma.18g284200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKVLLGLHLFCVLF*






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