Glyma.18g283800

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Report for Sequence Feature Glyma.18g283800

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56445016
stop:	56451963
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g283800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24265.1	AT	Protein of unknown function (DUF1664)	JGI	N/A	IEA
PF07889	PFAM	Protein of unknown function (DUF1664)	JGI	N/A	IEA

Proteins Associated with Glyma.18g283800

Locus	Gene Symbol	Protein Name
	BZIP55	bZIP transcription factor 55

Expression Patterns of Glyma.18g283800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g283800

Paralog	Evidence	Comments
Glyma.08g259700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g283800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g52020	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g283800

Limit To All Plant Sequences

>Glyma.18g283800.2 sequence-type=transcript locus=Glyma.18g283800 ID=Glyma.18g283800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAAAGGGAATATACTATTAATATACTAGTATTTTTATTTATTTTCACAGCTTCAAAACTAGGGTCGTCCACTGAGGAAACAAAGGAGCAGGGAGCACCGCAATCGCAAGGGTTTGTTCGATTTCATTGTCTTCTTTGTCTCGCTGGTCAATTCTCACCAGTGCCCAAACATAAACAATCTCAACGCACAATCGCACATAGCCTAATCCTAAACGCATCGTTTCGCGCTAAATGCTTCGCAACAGAGTGCGCTAGCTTGTTTGCTCAGACTCACTGGCGCCATGGCTCTTTCACTCGGCAAGCTCTTCATTCTCGTCGGCGCAGGTATAGCTGGTTCAGTAATTGCAAAAGAAGGGCGTCTGCCAGATGTCTCTGGTCTCGCCTCTGGTGCTTTTAAGGTTGTTTTGAGGCAACTTAAAAGCGATGATCCTGCTCCAACTGTTAAAAAGCAGCCGCATAATGATGCTTTGTTGGCTCAGGTTAACAGTCTTCGGCAGGAACTACAACTTCTTGCTAGAGATAGATCAATCACTATTGTAAATGCAAGTGGAACAGGTGGGAGAAAATATGCAACAGTGATTGTTATTGTTGTGGTAGGATATGGATACGTTTGGTGGAAGGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCAATTGGTAATCAGATGGGAAAGCTTTATGAATCAATTGGGGATACCAAGAAGAAATTATCTGCAAGAATCAACGGTCTGGATAAAAATTTAGAAGAATGTGCTGCCATTACTGAAAGTACCAGGGAGGATATATATGTAATTCAACGGAAAGCAGATACAATAAGTGAAGATTCGAAGTCTTTTCATGTTGCAGTCCATGTTCTGGAATCTAAAATTAAAGAAATAGAAGAGAAGCAGGTGGCCACAATTGAAGGAGTGAACATGTTGTGTCAATTTACCAAGACTTTGGAGAATAGCAGATCCACAGAGTATATTCAGGCATCTTCTTCCAGTTCTTCCAGGCCAGCCCTTGAGCTTCCACCAGTTTCACCCTCTTCCAGGGGTTCACAGTCAGGTTCCGCTAGGCTATCTCTTGAGCCACCATCAGTTACGCCATCATCAAGGGAACCTAAAGTAGACAAAAGCAATGGATCTAGTTCTGGCTTGTTTGGGTTGATATCTGGCGTCTATGGTCCATTGCTGACAAGAACTCGCAGTGCGACAGATGCAGTAGTCCAAAAAACTCGTTCGACTAGTTAACAGTAGCATGTCTCTTTTTCCTTTTTTGGACCGCAGTAAACTATATATAGATTATTGGACCTATGGTGGGGTTGAAAATCTTCACCAGTTGGTGACTGTTCAGAAGAATTATGAACCGTTAATTATAGTATGCCCGAGCCAAATTATAAACGACTGGGCATTAAATTTTGCAGCAGAGAGGCTGTTTCTCTCGAGTTTCATTAGGATTAAAATTAAAATAAGAATTTGTCCGATATTCAACTGGGAAAGCTGGTAAAGGAAAGAGTCACTATTGAATTGTTCTAAACCCTTTTGTTCACCGTATTATTTTTGAATTTTGAGAATTAGATGTAAAATCTTGTTAAGCATAG

Coding sequences of Glyma.18g283800

Limit To All Plant Sequences

>Glyma.18g283800.1 sequence-type=CDS polypeptide=Glyma.18g283800.1.p locus=Glyma.18g283800 ID=Glyma.18g283800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTTCACTCGGCAAGCTCTTCATTCTCGTCGGCGCAGGTATAGCTGGTTCAGTAATTGCAAAAGAAGGGCGTCTGCCAGATGTCTCTGGTCTCGCCTCTGGTGCTTTTAAGGTTGTTTTGAGGCAACTTAAAAGCGATGATCCTGCTCCAACTGTTAAAAAGCAGCCGCATAATGATGCTTTGTTGGCTCAGGTTAACAGTCTTCGGCAGGAACTACAACTTCTTGCTAGAGATAGATCAATCACTATTGTAAATGCAAGTGGAACAGGTGGGAGAAAATATGCAACAGTGATTGTTATTGTTGTGGTAGGATATGGATACGTTTGGTGGAAGGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCAATTGGTAATCAGATGGGAAAGCTTTATGAATCAATTGGGGATACCAAGAAGAAATTATCTGCAAGAATCAACGGTCTGGATAAAAATTTAGAAGAATGTGCTGCCATTACTGAAAGTACCAGGGAGGATATATATGTAATTCAACGGAAAGCAGATACAATAAGTGAAGATTCGAAGTCTTTTCATGTTGCAGTCCATGTTCTGGAATCTAAAATTAAAGAAATAGAAGAGAAGCAGGTGGCCACAATTGAAGGAGTGAACATGTTGTGTCAATTTACCAAGACTTTGGAGAATAGCAGATCCACAGAGTATATTCAGGCATCTTCTTCCAGTTCTTCCAGGCCAGCCCTTGAGCTTCCACCAGTTTCACCCTCTTCCAGGGGTTCACAGTCAGGTTCCGCTAGGCTATCTCTTGAGCCACCATCAGTTACGCCATCATCAAGGACTGCATCCTTGCCACCGACATTGTCTACGGATCCACCATCTCCATCAATTTCTGGTGGATCTTTCCAGGAACCTAAAGTAGACAAAAGCAATGGATCTAGTTCTGGCTTGTTTGGGTTGATATCTGGCGTCTATGGTCCATTGCTGACAAGAACTCGCAGTGCGACAGATGCAGTAGTCCAAAAAACTCGTTCGACTAGTTAA

>Glyma.18g283800.2 sequence-type=CDS polypeptide=Glyma.18g283800.2.p locus=Glyma.18g283800 ID=Glyma.18g283800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTTCACTCGGCAAGCTCTTCATTCTCGTCGGCGCAGGTATAGCTGGTTCAGTAATTGCAAAAGAAGGGCGTCTGCCAGATGTCTCTGGTCTCGCCTCTGGTGCTTTTAAGGTTGTTTTGAGGCAACTTAAAAGCGATGATCCTGCTCCAACTGTTAAAAAGCAGCCGCATAATGATGCTTTGTTGGCTCAGGTTAACAGTCTTCGGCAGGAACTACAACTTCTTGCTAGAGATAGATCAATCACTATTGTAAATGCAAGTGGAACAGGTGGGAGAAAATATGCAACAGTGATTGTTATTGTTGTGGTAGGATATGGATACGTTTGGTGGAAGGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCAATTGGTAATCAGATGGGAAAGCTTTATGAATCAATTGGGGATACCAAGAAGAAATTATCTGCAAGAATCAACGGTCTGGATAAAAATTTAGAAGAATGTGCTGCCATTACTGAAAGTACCAGGGAGGATATATATGTAATTCAACGGAAAGCAGATACAATAAGTGAAGATTCGAAGTCTTTTCATGTTGCAGTCCATGTTCTGGAATCTAAAATTAAAGAAATAGAAGAGAAGCAGGTGGCCACAATTGAAGGAGTGAACATGTTGTGTCAATTTACCAAGACTTTGGAGAATAGCAGATCCACAGAGTATATTCAGGCATCTTCTTCCAGTTCTTCCAGGCCAGCCCTTGAGCTTCCACCAGTTTCACCCTCTTCCAGGGGTTCACAGTCAGGTTCCGCTAGGCTATCTCTTGAGCCACCATCAGTTACGCCATCATCAAGGGAACCTAAAGTAGACAAAAGCAATGGATCTAGTTCTGGCTTGTTTGGGTTGATATCTGGCGTCTATGGTCCATTGCTGACAAGAACTCGCAGTGCGACAGATGCAGTAGTCCAAAAAACTCGTTCGACTAGTTAA

Predicted protein sequences of Glyma.18g283800

Limit To All Plant Sequences

>Glyma.18g283800.1.p sequence-type=predicted peptide transcript=Glyma.18g283800.1 locus=Glyma.18g283800 ID=Glyma.18g283800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSLGKLFILVGAGIAGSVIAKEGRLPDVSGLASGAFKVVLRQLKSDDPAPTVKKQPHNDALLAQVNSLRQELQLLARDRSITIVNASGTGGRKYATVIVIVVVGYGYVWWKGWKLPDLMFATRRGLSDACTSIGNQMGKLYESIGDTKKKLSARINGLDKNLEECAAITESTREDIYVIQRKADTISEDSKSFHVAVHVLESKIKEIEEKQVATIEGVNMLCQFTKTLENSRSTEYIQASSSSSSRPALELPPVSPSSRGSQSGSARLSLEPPSVTPSSRTASLPPTLSTDPPSPSISGGSFQEPKVDKSNGSSSGLFGLISGVYGPLLTRTRSATDAVVQKTRSTS*

>Glyma.18g283800.2.p sequence-type=predicted peptide transcript=Glyma.18g283800.2 locus=Glyma.18g283800 ID=Glyma.18g283800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSLGKLFILVGAGIAGSVIAKEGRLPDVSGLASGAFKVVLRQLKSDDPAPTVKKQPHNDALLAQVNSLRQELQLLARDRSITIVNASGTGGRKYATVIVIVVVGYGYVWWKGWKLPDLMFATRRGLSDACTSIGNQMGKLYESIGDTKKKLSARINGLDKNLEECAAITESTREDIYVIQRKADTISEDSKSFHVAVHVLESKIKEIEEKQVATIEGVNMLCQFTKTLENSRSTEYIQASSSSSSRPALELPPVSPSSRGSQSGSARLSLEPPSVTPSSREPKVDKSNGSSSGLFGLISGVYGPLLTRTRSATDAVVQKTRSTS*

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