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Report for Sequence Feature Glyma.18g281500

Feature Type:gene_model
Chromosome:Gm18
Start:56234929
stop:56241066
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g281500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09730.1AT Cysteine proteinases superfamily protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0006952GO-bp defense response EnsemblGenomesN/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008234GO-mf cysteine-type peptidase activity EnsemblGenomesN/AIEA
GO:0008234GO-mf cysteine-type peptidase activity JGI N/AIEA
GO:0043531GO-mf ADP binding EnsemblGenomesN/AIEA
GO:0043531GO-mf ADP binding JGI N/AIEA
KOG4658 KOG Apoptotic ATPase JGI N/AIEA
PTHR12438Panther UBIQUITIN-LIKE PROTEASE PROTEIN 2 JGI N/AIEA
PTHR12438:SF7Panther THIOL PROTEASE ULP-4-RELATED JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA
PF00931PFAM NB-ARC domain JGI N/AIEA
PF02902PFAM Ulp1 protease family, C-terminal catalytic domain JGI N/AIEA

Expression Patterns of Glyma.18g281500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g281500 not represented in the dataset
Glyma.18g281500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g281500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g51715 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g281500
>Glyma.18g281500.1 sequence-type=CDS polypeptide=Glyma.18g281500.1.p locus=Glyma.18g281500 ID=Glyma.18g281500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGGGGCTAGTAGCAGTAAAAGAAAAAGAAAAAGGGGAGGTCGGCCCAAAAGTAATTACTGGAATGAAGTTGAAAAAATAGGTGACATGTGGAAGTGCAACCATTGTGAAGGGGAGTTCCATGGAGGTGCTACAAGAATTAAAGAGCATATCATTGGTGGAGGAAAAAATATTAGAAAATGCCCCCACTATCCTGCTTCCGGTTCAATTACACGGAATCAATTACAAGAAGATGTGGAGCATGATTCTGCTGCATTTAAAAGCAATGACATGGAAAAGGCAATTTGTTATCCAAAGGGGGACCCTGATGCTATTTACATCAGGAAGAGCGATATTGAGCTTTTACAGCCTGAGAAATGCCTTAATGATAATATCATTGACTTTTATATAAAGTATTTGATAAATAATAAACTCCCAAGTGATAAACAGAAGAGGTTTCACTTTTTCAATTGCTTTTTCTTTCCTAAGCTTGTTGATTTAAGCACAGATAATCGTTCAATTGCTTGTGATGGTAAAGCAGCATTTCAGCGTGTAAGCAATTGGACAAGAAAAGTGAACCTTTTTGAAAAGGATTATATCTTCATTCCCATAAACTATAGTCTTCATTGGAGTTTGATTGTCATTTGTCACCCTGCTGAAGTCATGACATGCTACAGAGATGAAGAAACTAAGGGATCTCCCAAAGAAGCTTGCATCTTGCACATGGATTCCCGAAAAGGAATTCATCAAGATCTCCACAATGTTTTCCAAAGTTATCTATGTGAAGAATGGAAAGAGAGGCACAACAATGTGAGGGATGATGCTTCTTCTAAATTTTTAGATCTTCCATTCGTGCCACTTGAGCTGCCTCAGCAACAAAATGCATACGATTGTGGCATCTTTTTGCTCCACTATGTGGAACGTTTTCTGGAAAAAGCTCCAATCAACTTTAACCGTTCCCTGATAACCAACTTCAGTTCTTGGTTCCCTCCACTAGATGCTTCTCTGAAACGATCTCATATACAGAAACTATTAATAGTTGAAGGAGGCAACAAAATGATTGATGGTGATTCAGTTAACTCTCAAAACAATACAAAATTGTCAGCTTCAGCAGGAGGTGATGTAGAAGATCATGCTGTGAACGGAGGTAGCAATGGCGATGATGCTTTGACTATAAATAAGTTGCTATCCGATCTAGCAAGGCAAGAAGACTACTTTGATAAAAGCTTACAGTGGCGGGAGTTCCAGGGCAAGAAGCGCAAGAGACAAGATGACAATTGGTTGGATAAACTAAAGGACCTGAAAAAAAGAGCCATTGATGTGAAAAACTCACTGCATCAGTCTGGGTCGACTAATGAATTCCCCAAGCCTTCTGAATTGGGTGATGAGTTTTTTTATTTATCGATAGAGAAGCGTTGGGCGTCGCGAGATAAAAAAGTGGAGAACATGTGGGATCTTCTGGAGGATGAGGAAGTCTTCATTATTGGCATAGATGGAATGGGGGGAGTTGGAAAAACATTCATGGCAACTCATATCAAGAATGAGATTAAAAGAAAGGGGACTTTCAAGGATGTCTTCTGGGTCACTGTTTCCCATGATTTCACCAATTTCAAATTGCAACATGACATTGCAGAAACAATACAGGTTAAGCTTTACGGAGATGAGATGACTAGAGCAACAATTTTGACGTCAGAGTTGGAGAAAAGAGAAAAAGCACTGCTTATTTTGGATGATGTTTGGGAATATATTGATCTGCAAAAGGTGGGGATTCCTCTTAAAGTGAATGGCATTAAATTGATTATCACAACTCGTTTGAAACATGTGTGTCTACAGATGGATTGCCAACCATATAATATAATAACAATATTCCCCTTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGCTTGGGAGTTATTTTTGCTAAAACTTGGACACCGTGGAACACCTGCAAGACTTCCCCCTCATGTACTAGAGATTGCAAGATCTGTTGTAATGAAATGTGATGGTTTACCACTTGGAATCAGTGTGATGGCTCGAACCATGAAAGGGAAAAATGAGATCCATTGGTGGAGACATGCATTGAATAAACTTGACAGATTGGAAATGGGAGAAGAGGTCTTAAGCGTACTAAAACGTAGCTATGACAATTTAATTGAAAAGGACATCCAAAAATGTTTCTTACAGTCTGCACTGTTTCCTAATGCTGATGAAGGGAAATGGGCTATGATGATTGTTGAGAGTGGGTTGTTAAATGGAAAGGGGAGTTTGGAGGAAATATTTGATGAGGCACGTGTCATAGTGGATAAACTCATAAACCATTCTTTGTTGTTAGGTTATTGGAGTTTACGAATGAATGGTCTGTTGAGGAAGATGGCGTGCAATATCTTGAACGAGAATCACACTTACATGATAAAATGTCATGAAAATTTGAGAAAGATACCTCAGATGCGGGAATGGACAGCTGATCTGGAGGCAGTTTCTTTGGCGGGTAATGAGATAGAAGAAATAGCAGAGGGCACATCACCTAATTGTCCACGCTTGTCCACCTTCATCTTATCTCGTAATTCCATCAGTCATATTCCCAAGTGTTTTTTCAGACACATGAACGCTCTAACACAACTTGATTTATCATATAATCGTAGATTAACATCTTTGCCAAAGTCGCTGTCTAAGTTGAGGTCTCTTACTTCTTTAGTGCTCCGCCAATGTTCAAAATTGAAAGATATACCTCCACTGGGAGATCTACAAGCATTGTCAAGATTGGACATTTCCGGTTGTAATTCGCTCCTCAGGGTACCGGAAGGCTTGCAAAATCTAAAAAAGTTGCAATGGCTTAGTCTTTCCCGCAAGCTGAATTTATCATTAGTACCGTTATGCGTACTGCCCGGTTTGAGCAATATGCAATATCTGGATCTCCGCGGTTGGTCTGGTATAAAAGTAGAAGATGTAAAAGGGATGACTATGCTTGAATGTTTTGCAGTAAGCTTTCTCGATCAGGATTACTACAACCGTTCTGTGCAAGAAATTCAGGACACTGGTTATGGACCTCAAACCTATTTTATCTATTTTGGAAAATTTAAGGATTACACACTTGGATTTTCTGAGAATCTTATTTATGGTGAATTCAAGCATCGAAGGGTATGTTTTGGAGATTGCGATGGATTACACTATTTACTGCCAAGAGACCTTGCAGAATTACTTGTAAGTGGCAATGATCAATGGGAATGCTTATGTGCTCCTCTGTCATCTAATGGTTCTCTATCTTTAAAGCACATTACCATTCGGGACTGCACAAAATTGAAGAGTTTATTCTGTGTATCTTGTCCCTTATGCACTAATATCCAAAACCTCAAATCTTTGACACTTAATAATTTGGATAGTTTAAGTGTCATCTGCAAGGAAGATGTTGCTGGTTTAACACAATCTTTATCTCGGAGGGGGGTGTTTTCTCATCTCAAGGAATTGAGTATCAGTGGATGCCATCAAATAGAGAAGTTGCTGACGCCAGGGTTAGTGCCACAACTTCAAAACCTGAAGTCTATATCGGTATCGAACTGCCAATCAATAAAGGAGATATTTGCAGGAGATAGTTCCCACAACATTGCACTTCCCAATTTAACCAACTTGCAACTATACTGGTTACCAGACTTAAAGACAGTGTGCAAAGGAATTTTACTCATTAACTCTGAGGATATATTGCACATCAACAATTGTCCCAATTATGAAAAACCCAGAATTAGTCGTGTATGA
Predicted protein sequences of Glyma.18g281500
>Glyma.18g281500.1.p sequence-type=predicted peptide transcript=Glyma.18g281500.1 locus=Glyma.18g281500 ID=Glyma.18g281500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNGASSSKRKRKRGGRPKSNYWNEVEKIGDMWKCNHCEGEFHGGATRIKEHIIGGGKNIRKCPHYPASGSITRNQLQEDVEHDSAAFKSNDMEKAICYPKGDPDAIYIRKSDIELLQPEKCLNDNIIDFYIKYLINNKLPSDKQKRFHFFNCFFFPKLVDLSTDNRSIACDGKAAFQRVSNWTRKVNLFEKDYIFIPINYSLHWSLIVICHPAEVMTCYRDEETKGSPKEACILHMDSRKGIHQDLHNVFQSYLCEEWKERHNNVRDDASSKFLDLPFVPLELPQQQNAYDCGIFLLHYVERFLEKAPINFNRSLITNFSSWFPPLDASLKRSHIQKLLIVEGGNKMIDGDSVNSQNNTKLSASAGGDVEDHAVNGGSNGDDALTINKLLSDLARQEDYFDKSLQWREFQGKKRKRQDDNWLDKLKDLKKRAIDVKNSLHQSGSTNEFPKPSELGDEFFYLSIEKRWASRDKKVENMWDLLEDEEVFIIGIDGMGGVGKTFMATHIKNEIKRKGTFKDVFWVTVSHDFTNFKLQHDIAETIQVKLYGDEMTRATILTSELEKREKALLILDDVWEYIDLQKVGIPLKVNGIKLIITTRLKHVCLQMDCQPYNIITIFPFEEEEEEEEEEEEEEKEEEEEAWELFLLKLGHRGTPARLPPHVLEIARSVVMKCDGLPLGISVMARTMKGKNEIHWWRHALNKLDRLEMGEEVLSVLKRSYDNLIEKDIQKCFLQSALFPNADEGKWAMMIVESGLLNGKGSLEEIFDEARVIVDKLINHSLLLGYWSLRMNGLLRKMACNILNENHTYMIKCHENLRKIPQMREWTADLEAVSLAGNEIEEIAEGTSPNCPRLSTFILSRNSISHIPKCFFRHMNALTQLDLSYNRRLTSLPKSLSKLRSLTSLVLRQCSKLKDIPPLGDLQALSRLDISGCNSLLRVPEGLQNLKKLQWLSLSRKLNLSLVPLCVLPGLSNMQYLDLRGWSGIKVEDVKGMTMLECFAVSFLDQDYYNRSVQEIQDTGYGPQTYFIYFGKFKDYTLGFSENLIYGEFKHRRVCFGDCDGLHYLLPRDLAELLVSGNDQWECLCAPLSSNGSLSLKHITIRDCTKLKSLFCVSCPLCTNIQNLKSLTLNNLDSLSVICKEDVAGLTQSLSRRGVFSHLKELSISGCHQIEKLLTPGLVPQLQNLKSISVSNCQSIKEIFAGDSSHNIALPNLTNLQLYWLPDLKTVCKGILLINSEDILHINNCPNYEKPRISRV*






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