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Report for Sequence Feature Glyma.18g278100

Feature Type:gene_model
Chromosome:Gm18
Start:55964515
stop:55967181
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g278100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02380.1AT CONSTANS-like 2 JGI N/AIEA
GO:0009416GO-bp response to light stimulus EnsemblGenomesN/AIEA
GO:0009909GO-bp regulation of flower development EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1601 KOG GATA-4/5/6 transcription factors JGI N/AIEA
PF00643PFAM B-box zinc finger JGI N/AIEA
PF06203PFAM CCT motif JGI N/AIEA

Proteins Associated with Glyma.18g278100
LocusGene SymbolProtein Name
COL2B zinc finger protein CONSTANS-LIKE 2
COL1b Contsans-like 1 gene b

Expression Patterns of Glyma.18g278100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g278100
ParalogEvidenceComments
Glyma.08g255200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g278100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g51320 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g278100
>Glyma.18g278100.2 sequence-type=transcript locus=Glyma.18g278100 ID=Glyma.18g278100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTTGAGTTTCTTCTCTTCACTCTCAGAACACTAACTCCCCCAATGTTGGAGGGCCAAGCAACAACGCCCACGTGGCCGCGCATGTGCGACACGTGCCGCTCCGTCCCCTCCACCGTCTTCTGCCGCTCCCACACCGCCTTTCTCTGCGCCACGTGCGACACTCGCCTCCACGTCTCTCTCACGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGgccgacgccgcctccctctgcgcctcctgcgacgccgacatccacgccgccaaccccctcgccagccgccaccaccgcGTCCCCATCCTCCCCATcgccgccgccaacaacaacaacaacgacgacgacgacgttgctgacgttgacgacgaagacgaAACCGCTTCATGGCTCTTGCTCAACCCTATCAAGAGTGCTACTGTCCCTAACACCAATAACAATAACAATAATAACGGGTTCTTGTATAACGCTGCTGCTACTACTGATCATTACGCTCAGCACCAACATTTCGCTGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCAACACCAGCATTTTCAGCTTGGGTTGGAGTTTGACAACTCCAAACCTGCCTTCAGTTACAATGGTTCTGTTAGTCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCAATGAGGGATGTCTCAATTGCCCATACAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCAATTCAGGTGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGATGAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCGACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGAATATGCTGTGTAGAACAAATGGCCAGAAGACATTGAAGATGCTAGAGGATCATGATTAATAGAAATGGAAACCACTTGTGTACTAAGTTATTCTGCTGATAATGTATTTTTTATGTAATCTAATTGCTTGCAGTTGTACTAATCGGATGCTTTATTATTTTGTTTATTGTCTTTTGAATGAAACTTGTATTTGTAAATACAGTCCTTGTATTAAATTATTAAATTACAGTCAAGTCAATCATATCTCGAAAATTTTTCATTTTCTCAATTTC
Coding sequences of Glyma.18g278100
>Glyma.18g278100.1 sequence-type=CDS polypeptide=Glyma.18g278100.1.p locus=Glyma.18g278100 ID=Glyma.18g278100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGAGGGCCAAGCAACAACGCCCACGTGGCCGCGCATGTGCGACACGTGCCGCTCCGTCCCCTCCACCGTCTTCTGCCGCTCCCACACCGCCTTTCTCTGCGCCACGTGCGACACTCGCCTCCACGTCTCTCTCACGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACGCCGCCAACCCCCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCCGCCGCCAACAACAACAACAACGACGACGACGACGTTGCTGACGTTGACGACGAAGACGAAACCGCTTCATGGCTCTTGCTCAACCCTATCAAGAGTGCTACTGTCCCTAACACCAATAACAATAACAATAATAACGGGTTCTTGTATAACGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAATTGTAACTCTTGTGGTGATAATAATCACTTCGCTTCAGCTGCTGCTACTACTGATCATTACGCTCAGCACCAACATTTCGCTGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCAACACCAGCATTTTCAGCTTGGGTTGGAGTTTGACAACTCCAAACCTGCCTTCAGTTACAATGGTTCTGTTAGTCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCAATGAGGGATGTCTCAATTGCCCATACAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCAATTCAGGTGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGATGAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCGACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA

>Glyma.18g278100.2 sequence-type=CDS polypeptide=Glyma.18g278100.2.p locus=Glyma.18g278100 ID=Glyma.18g278100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGAGGGCCAAGCAACAACGCCCACGTGGCCGCGCATGTGCGACACGTGCCGCTCCGTCCCCTCCACCGTCTTCTGCCGCTCCCACACCGCCTTTCTCTGCGCCACGTGCGACACTCGCCTCCACGTCTCTCTCACGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACGCCGCCAACCCCCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCCGCCGCCAACAACAACAACAACGACGACGACGACGTTGCTGACGTTGACGACGAAGACGAAACCGCTTCATGGCTCTTGCTCAACCCTATCAAGAGTGCTACTGTCCCTAACACCAATAACAATAACAATAATAACGGGTTCTTGTATAACGCTGCTGCTACTACTGATCATTACGCTCAGCACCAACATTTCGCTGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCAACACCAGCATTTTCAGCTTGGGTTGGAGTTTGACAACTCCAAACCTGCCTTCAGTTACAATGGTTCTGTTAGTCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCAATGAGGGATGTCTCAATTGCCCATACAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCAATTCAGGTGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGATGAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCGACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA
Predicted protein sequences of Glyma.18g278100
>Glyma.18g278100.1.p sequence-type=predicted peptide transcript=Glyma.18g278100.1 locus=Glyma.18g278100 ID=Glyma.18g278100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEGQATTPTWPRMCDTCRSVPSTVFCRSHTAFLCATCDTRLHVSLTWHERVWVCEACERAPAAFLCKADAASLCASCDADIHAANPLASRHHRVPILPIAAANNNNNDDDDVADVDDEDETASWLLLNPIKSATVPNTNNNNNNNGFLYNGEVDEYLDLVDNCNSCGDNNHFASAAATTDHYAQHQHFAGVSQKSYAGDSVVPVQQHQHFQLGLEFDNSKPAFSYNGSVSQSVSVSSMDIGVVPESPMRDVSIAHTRPPKGTIDLFSGPPIQVPSHFSPMDREARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF*

>Glyma.18g278100.2.p sequence-type=predicted peptide transcript=Glyma.18g278100.2 locus=Glyma.18g278100 ID=Glyma.18g278100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEGQATTPTWPRMCDTCRSVPSTVFCRSHTAFLCATCDTRLHVSLTWHERVWVCEACERAPAAFLCKADAASLCASCDADIHAANPLASRHHRVPILPIAAANNNNNDDDDVADVDDEDETASWLLLNPIKSATVPNTNNNNNNNGFLYNAAATTDHYAQHQHFAGVSQKSYAGDSVVPVQQHQHFQLGLEFDNSKPAFSYNGSVSQSVSVSSMDIGVVPESPMRDVSIAHTRPPKGTIDLFSGPPIQVPSHFSPMDREARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF*






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