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Report for Sequence Feature Glyma.18g277300

Feature Type:gene_model
Chromosome:Gm18
Start:55917312
stop:55920484
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g277300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02360.1AT 6-phosphogluconate dehydrogenase family protein JGI N/AIEA
GO:0006098GO-bp pentose-phosphate shunt EnsemblGenomesN/AIEA
GO:0006098GO-bp pentose-phosphate shunt JGI N/AIEA
GO:0019521GO-bp D-gluconate metabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004616GO-mf phosphogluconate dehydrogenase (decarboxylating) activity EnsemblGenomesN/AIEA
GO:0004616GO-mf phosphogluconate dehydrogenase (decarboxylating) activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding JGI N/AIEA
KOG2653 KOG 6-phosphogluconate dehydrogenase JGI N/AIEA
PTHR11811Panther 6-PHOSPHOGLUCONATE DEHYDROGENASE JGI N/AIEA
PF00393PFAM 6-phosphogluconate dehydrogenase, C-terminal domain JGI N/AIEA
PF03446PFAM NAD binding domain of 6-phosphogluconate dehydrogenase JGI N/AIEA
OXIDATIVEPENT-PWYSoyCyc9 pentose phosphate pathway (oxidative branch) I Plant Metabolic Network ISS
PENTOSE-P-PWYSoyCyc9 pentose phosphate pathway Plant Metabolic Network ISS
GN7V-52307SoyCyc9-rxn phosphogluconate dehydrogenase (decarboxylating) Plant Metabolic Network ISS

Proteins Associated with Glyma.18g277300
LocusGene SymbolProtein Name
GND 6-phosphogluconate dehydrogenase

Expression Patterns of Glyma.18g277300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g277300
ParalogEvidenceComments
Glyma.08g254500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g277300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g51260 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g277300
>Glyma.18g277300.1 sequence-type=CDS polypeptide=Glyma.18g277300.1.p locus=Glyma.18g277300 ID=Glyma.18g277300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCAACCCACAACAAGAATAGGCCTTGCTGGATTGGCTGTTATGGGCCAAAATCTGGCACTCAATATTGCTGAGAAAGGCTTTCCCATTTCTGTTTACAACCGAACCACTTCCAAGGTTGATGAGACAGTAGAACGAGCAAAACAAGAAGGAAATCTTCCAGTTTATGGCTACCATGACCCTGAAGCTTTTGTTCATTCCATTCAAAAGCCTAGGGTGATAATAATGCTTGTTAAGGCTGGGGCACCTGTTGACCAGACCATTAAGACCCTATCTGCGTACATGGAAAAAGGTGACTGTATAATTGATGGTGGTAACGAATGGTATGAGAACACTGAAAGAAGAGAGAAAGAGGTGGCTGAATTGGGTCTGCTCTACCTTGGGATGGGAGTTTCTGGTGGTGAGGAAGGTGCTCGTAATGGTCCCTCTTTGATGCCTGGTGGTTCGTTTGAGGCTTTCAAATACATAGAAGATATTCTTCTCAAGGTGGCAGCTCAAGTACCTGACAGTGGTCCTTGCGTGACTTATATTGGTAAAGGTGGTTCTGGTAATTTTGTGAAGATGATCCACAATGGCATTGAGTATGGTGACATGCAGCTGATTGCAGAGGCCTATGATGTGCTGAAATCAGTTGGAAAGTTGTCAAATGAGGAACTACAAAGTGTCTTCTCAGAATGGAACAAGGGAGAACTTCTGAGTTTCCTGATTGAAATCACTGCAGATATATTTGGAATTAAGGATGATAAGGGAGATGGATATCTTGTTGACAAGGTCCTAGACAAGACTGGCATGAAGGGCACTGGTAAGTGGACTGTTCAGCAAGCTGCTGAATTATCAATTGCTGCTCCCACTATTGAAGCATCATTGGATGCAAGGTTCCTGAGTGGGTTGAAGGAGGAAAGAGTTGAAGCTGCAAAGGTCTTTAAATCAGGTGGCATTGGTGATATTGTGACTGATCAACCTGTAGACAAGCAGAAGTTGATTGATGATGTTAGGAAGGCTCTTTATGCAGCCAAAATCTGTAGTTATGCACAGGGAATGAATTTGATCCGTGCAAAGAGTATTGAAAAGGGTTGGGATTTGAAGTTGGGTGAACTGGCCCGGATTTGGAAAGGGGGTTGCATTATTAGAGCAATATTCTTAGACAGAATCAAGCAGGCATATGAAAGAAACCCTAATCTGGCAAACCTTCTTGTGGATCCAGAGTTTGCAAAGGAAATAATTGATTACCAATCTGCCTGGAGGAGAGTTGTTTGCCTTGCTATCAATTCTGGTATTAGCACTCCAGGTATGTCTGCTAGTCTTGCTTATTTTGACACTTACAGAAGGGAAAGGTTGCCAGCTAATTTGGTGCAAGCTCAACGAGACTACTTTGGTGCTCATACATATGAAAGGGTTGACATAGAGGGGTCTTACCATACTGAGTGGTTCAAGCTTGCCAAACAGTCAAGAAATTAG
Predicted protein sequences of Glyma.18g277300
>Glyma.18g277300.1.p sequence-type=predicted peptide transcript=Glyma.18g277300.1 locus=Glyma.18g277300 ID=Glyma.18g277300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQPTTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAFVHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKEVAELGLLYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEAAKVFKSGGIGDIVTDQPVDKQKLIDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKQAYERNPNLANLLVDPEFAKEIIDYQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSRN*






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