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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15700.1 | AT | DNA/RNA polymerases superfamily protein | JGI | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | JGI | N/A | IEA |
| GO:0006390 | GO-bp | mitochondrial transcription | EnsemblGenomes | N/A | IEA |
| GO:0034245 | GO-cc | mitochondrial DNA-directed RNA polymerase complex | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003899 | GO-mf | DNA-directed 5'-3' RNA polymerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003899 | GO-mf | DNA-directed RNA polymerase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016779 | GO-mf | nucleotidyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1038 | KOG | Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation | JGI | N/A | IEA |
| PTHR10102 | Panther | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00940 | PFAM | DNA-dependent RNA polymerase | JGI | N/A | IEA |
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Glyma.18g276200 not represented in the dataset |
Glyma.18g276200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g253800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g51160 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g276200.1 sequence-type=CDS polypeptide=Glyma.18g276200.1.p locus=Glyma.18g276200 ID=Glyma.18g276200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTCCCTTCCCCCAATTCCCTCGCCAAGGGACTCAATTCTCTTCCCAACCCTCTCATTTCCCAATCCTCTCACTCCGCCATTTCGTCGAACATGTGGCGGCACGCCGCCAAACACGTCTGCCGCGGTATTATTCGCCAAAACTTCCACCCTCCAAGGCTTCTCGCTCTCTCCCACGGCTCCGTTTTCTCCCCCAAAAGGGAGGTTTTGCTGTCCAGCGTGGCAAAACTAAACTGTATTGCCCGTGGCGATTTCCAGTTTCAGTTTGGCGCCAAAGGGTATTCCGGTGTTGCCGAGGCGGTTTCTTCCACTGATGTGGAGGAAGATGGTGGTACTGCTGTTGATGAAATTCAGCAACTTTTATGGCAGGAGATGAATGACGAAGTGGAGAGTCAACTGGGGGAGGAAGAGGGTGCCCCAATTGATGAAATTCAGCAACTGTTATTGCAGGAGATGAATGAAGAAGAGAAGAATGAATTGGTGGAGGAAGAGGCTGCCCCAGTTGATGGAATTCAAGAGCTATTGCAGGGGATGAAGAAAGAGAAGCAGAAGAAGGTGGTTGGGTATAGGTGGAAGAATCAGGGGAAGGGTGTGGGGCAGTCTAGGTACCAGGAGCTGAGAAGGAGGCAGGTTAAGATTGAGACTGAGATGTGGGAAGAGGCGGCGAAGGAGTATAGGGAGCTTTTGATGGACATGTGTGAGCATAAGCTGGCACCCAATTTGCCATACATGAAGTCGCTCTTTCTCGGCTGGTTTGAGCCTCTGAGGGATGCCATTGTCAAGGAACAGGAGATGTATAGTGAAGGGAAGAATAGGATGGCCTATGCGCCATACTTTGTTCAGTTGCCGGCTGACAAGATGGCTGTTATCGCAATGCATAAGTTGATGGGGCTGTTGATGACAGGAAACGAACGTGTCACCATTGGCACTGCCAGGGTTGTGCAGGCTGCGTGCGGCATAGGCGATGCCATTGAAAATGAGGTTAGAATACACAAGTTCTTGGAGAAAACTAAGAAGAAAAAGGGTGATAGAAGCAACAAAAATAAAGCAGGTGAGTCTGTTGCTGACATCAAAGAGGAACAAAAGCTACGGAAAAAAGTCATTGATTTGATGAAAAAGCAAAAGCTAGTTGCAGTGAGGGGGCTAGTGAAGGGCAAGGATGATACAAAACCGTGGGGAGCAGTCATAAAGACAAAGGTAGGAAGCCGTTTAATTGAGCTCTTGTTGCAAACAGCATATATACAACCACCATCAGATCAATTACCGGATGCTGCACCTGATATCCGACCTGCATTTGTTCATTCATTTAAAACAGTGACAAAAGAGTCAATTAAAGCAAGCAGAAGATATGGTATTATTCAATGTGACCCTCTAATTCTTAAAGGACTTGAAAGAACCGCCAAAAATATGGTCATTCCTTATATGCCTATGTTGGTTCCACCGGTCAACTGGACAGGTTATGACAAAGGTGGACACTTGTTCTTACCCTCTTATGTCATGCGTACTCATGGAGTCAGGCAACAGCGTGAAGCTGTTAAGAGGGCCCCTAGGAAGCAACTAGAGCCTGTATTTGAGGCTCTGGATACTCTCGGGCATACGAAATGGAGGGTAAATAAGAAGGTACTGAGTGTTGTAGACAGGATATGGGCTAGTGGAGGCCGTATTGCTGATTTGGTGGACCGCGATGATGTTCCTTTACCTGACGAGCCAGATACTGATGATGAAGCGAAGATAAAGAAATGGAAGTGGAAATACAAATCTCTGCAGAAAGAGAACAGAGAGAGATATTCACAACGTTGTGACATAGAACTTAAACTTGCTGTAGCGCGAAAAATGAAGGATGAAGAGGGTTTTTACTACCCACACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCACACTTAAATCACCTTGGTTCAGATTTATGCCGGGGTATATTGGAATTTGCAGAGGGACGCTCTCTTGGAAAGTCGGGCCTACGTTGGCTGAAGATACACTTGGCAAATCTATATGCTGGTGGTGTTGATAAACTATCATATGAAGGTCGCTTAGCGTTCACTGAAAATCATTTTGAAGACATATTTGATTCTGCAGACAAACCTCTTGAAGGGAGGCGGTGGTGGTTGAAAGCAGAAGATCCATTGCAGTGCTTAGCTGTGTGCATAACTCTAACTGAAGCTTTAAGAAGTTCTTCACCAGAAACATTCATCTCACATATTCCAGTACATCAGGATGGCTCCTGTAATGGCTTACAACATTATGCTGCCTTGGGGAGAGACAAGTTAGGGGCTGCTGCTGTCAATCTAGTTACAGGAGAGAAGCCAGCAGATGTTTACTCAGGAATAGCAGCTAGAGTATCAAACATCATGCAAAGGGATGCTCAGAAAGATCCTGCAGTTTTTCGTGATGCTCTTCATGCAAGGACTTTAGTTAATCAGGTGGATAGAAAATTGGTTAAGCAGACAGTGATGACATCAGTGTATGGTGTCACTTATATTGGTGCACGGGAGCAGATAAAAAGGAGATTGAAAGAAAGGAATGCCATTTCAGATGATAAAGAGCTCTTTGGTGCTTCTTGTTATGCTGCAAAGGTCACCTTAACTGCCTTAGAGGAGATGTTTCAAGGTGCACGAGGTATCATGAGCTGGCTTGGTGACTGTGCAAAAGTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATTATCAAAACTTCACTTCAAATTTTGACATTGCAGCGAGAAACAGATAAGGTCATGGTCACAAGGCAGAGGACAGCATTTCCGCCAAATTTTGTTCATTCACTTGATGGTTCTCATATGATGATGACTGCTGTTGCCTGCAAAAAGGAAGGTTTGAGTTTTGCAGGGGTTCATGATTCATATTGGACGCATGCATGCGATGTGGATAAAATGAACAGAATACTGAGAGAGAAGTTTGTAGAACTCTACGAGACCCCAGTGCTGGAAAATTTACTGGAGAGCTTTCAGAGCTCTTTCCCATCATTATCTTTTCCATCCTTGCCTGAACGGGGAGACTTTGACTTGAAGGAAGTTTTAGAGTCACCATATTTCTTCAACTGA
>Glyma.18g276200.1.p sequence-type=predicted peptide transcript=Glyma.18g276200.1 locus=Glyma.18g276200 ID=Glyma.18g276200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFPSPNSLAKGLNSLPNPLISQSSHSAISSNMWRHAAKHVCRGIIRQNFHPPRLLALSHGSVFSPKREVLLSSVAKLNCIARGDFQFQFGAKGYSGVAEAVSSTDVEEDGGTAVDEIQQLLWQEMNDEVESQLGEEEGAPIDEIQQLLLQEMNEEEKNELVEEEAAPVDGIQELLQGMKKEKQKKVVGYRWKNQGKGVGQSRYQELRRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVKEQEMYSEGKNRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSNKNKAGESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPDIRPAFVHSFKTVTKESIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWTGYDKGGHLFLPSYVMRTHGVRQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRIADLVDRDDVPLPDEPDTDDEAKIKKWKWKYKSLQKENRERYSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGVDKLSYEGRLAFTENHFEDIFDSADKPLEGRRWWLKAEDPLQCLAVCITLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIAARVSNIMQRDAQKDPAVFRDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNAISDDKELFGASCYAAKVTLTALEEMFQGARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGKHIIKTSLQILTLQRETDKVMVTRQRTAFPPNFVHSLDGSHMMMTAVACKKEGLSFAGVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQSSFPSLSFPSLPERGDFDLKEVLESPYFFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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