Glyma.18g273600

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Report for Sequence Feature Glyma.18g273600

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55638209
stop:	55646547
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g273600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60910.1	AT	AGAMOUS-like 8	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0045944	GO-bp	positive regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0000977	GO-mf	RNA polymerase II regulatory region sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	sequence-specific DNA binding transcription factor activity	JGI	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	EnsemblGenomes	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	JGI	N/A	IEA
KOG0014	KOG	MADS box transcription factor	JGI	N/A	IEA
PTHR11945	Panther	MADS BOX PROTEIN	JGI	N/A	IEA
PTHR11945:SF19	Panther		JGI	N/A	IEA
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI	N/A	IEA
PF01486	PFAM	K-box region	JGI	N/A	IEA

Proteins Associated with Glyma.18g273600

Locus	Gene Symbol	Protein Name
	DT2	MADS-box protein Dt2

Expression Patterns of Glyma.18g273600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g273600

Paralog	Evidence	Comments
Glyma.08g250800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g273600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g50910	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.18g273600

Limit To All Plant Sequences

>Glyma.18g273600.1 sequence-type=CDS polypeptide=Glyma.18g273600.1.p locus=Glyma.18g273600 ID=Glyma.18g273600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTGACGTTTTTCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAGCGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATATTTTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACCTCCTTGAACGTTACGAGAGATGTAGCCATACAGCACTTGCTGGAGCTAACAATGTCGAATCACCGGGATTTTGGTCTTTCGAACATATCAAGCTCACCGCTAAAGTTGAAGTCTTGGAGAGGAACATAATGAATTTCTTTGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCACAGTTTGGAGCAGCAGATTGAGACATCTCTGAAGCGCATCCGAACTAGAAAGAATCAAGTTATGAATCAATCCGTCTCAGACCTGCATAAAAAGGCAAGGACATTACAAGTGCAAAACAGATGGCTAGGAAAGATGAAGGAGAAAGCGAAGACAGTGACTGAAGGTCCACACAACGGCCCAGAAACTCTAGGCTTTGATTCATCCACACTCAACTTATCTTCTCCACAGCTACCACCACCACCATCACCACAAAGACTGGTTCCTTCTCTAACTCTCAGTGAGACAATGCAAGGAGGAACACCAGTGGAAGAAACGGGTGAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTGCGCTGCATGTCTGACTAG

Predicted protein sequences of Glyma.18g273600

Limit To All Plant Sequences

>Glyma.18g273600.1.p sequence-type=predicted peptide transcript=Glyma.18g273600.1 locus=Glyma.18g273600 ID=Glyma.18g273600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGRVQLKRIENKTSQQVTFFKRRSGLLKKASEISVLCDAQVALIIFSTKGKLFEYSSERSMEDLLERYERCSHTALAGANNVESPGFWSFEHIKLTAKVEVLERNIMNFFGNDLDPLSLKELHSLEQQIETSLKRIRTRKNQVMNQSVSDLHKKARTLQVQNRWLGKMKEKAKTVTEGPHNGPETLGFDSSTLNLSSPQLPPPPSPQRLVPSLTLSETMQGGTPVEETGEAQTVPSGNSLIPPWMLRCMSD*

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