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Report for Sequence Feature Glyma.18g273500

Feature Type:gene_model
Chromosome:Gm18
Start:55619766
stop:55625860
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g273500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02310.1AT K-box region and MADS-box transcription factor family protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
KOG0014 KOG MADS box transcription factor JGI N/AIEA
PTHR11945Panther MADS BOX PROTEIN JGI N/AIEA
PTHR11945:SF19Panther JGI N/AIEA
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI N/AIEA
PF01486PFAM K-box region JGI N/AIEA

Expression Patterns of Glyma.18g273500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g273500
ParalogEvidenceComments
Glyma.08g250700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g273500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g50900 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g273500
>Glyma.18g273500.2 sequence-type=transcript locus=Glyma.18g273500 ID=Glyma.18g273500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
aaaaacttcacacacacaacacaacactttcctctctctctctctctctctctctAGGGTTCCAAGTTTGAACTTGAAAGTGTTGAACTTTCTCTAGCTTTTTCACAAATTTGGTTGCACTTGCAACTGAGGCAGGAAAGAGGGATCACCAGGGGGCACGagaggaggaagaggaaagagaagaaaaaacaagaaaagtagagaaAGGGGTAGGTGTTGTACAGAAATAGAAATTAAAAAATTGAGTGAAAAATTAAAAGGGAAATTTTTTTAGAAGAAGAGTGATAGGGATATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACTTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGCTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAAGAGCTCGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGaaaccttttaggggaagacttaggcccactgaatatcaaagaacttgagcatcttgaacggcaattggattcatctctaaagcaagtgaggtccacaaagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAGGAGCAGATGTTAGTAGAAGCAAACAGATCCTTGACAGTGAAGCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTGGTCCAGAGAATTCTCACTCTCATTCTCACTCTCAGGGCTTCTTCCAACCATTGGAATGCAACCCTACACTACATATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGAACTAATTAGACTCAGTGCATTCAGGTGGAGACATAAAAAAGCAAACACCTTACAAAGGGCAAAAGCCAAAAATGCATCTTGGTGTTGGCAAGGTGTAAATGCAACCCTGCTTCTACAGTTATTTTGGTGTATAAGAAACTGATGTTGTGACTTGTTCAAACTTTTGAACTTTTAGCCATAGACATATATGGCAATTTATAACATTAGGTATCTTTTAAAGGATCCCTTTTTATTATTAAATATCTGAACGACCGATTTCAATTTTCTTCTATTGCATTACATATTAATCTTGGCTTGATGTAAGCTCAGTTTTCTTCTAGGTTTTTGCTTGCATTATAAGTGAAAGATTGT
Coding sequences of Glyma.18g273500
>Glyma.18g273500.1 sequence-type=CDS polypeptide=Glyma.18g273500.1.p locus=Glyma.18g273500 ID=Glyma.18g273500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACTTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGCTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAAGAGCTCGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGAAACCTTTTAGGGGAAGACTTAGGCCCACTGAATATCAAAGAACTTGAGCATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAGGAGCAGATGTTAGTAGAAGCAAACAGATCCTTGACAGTGAAGCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTGGTCCAGAGAATTCTCACTCTCATTCTCACTCTCAGGGCTTCTTCCAACCATTGGAATGCAACCCTACACTACATATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA

>Glyma.18g273500.2 sequence-type=CDS polypeptide=Glyma.18g273500.2.p locus=Glyma.18g273500 ID=Glyma.18g273500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACTTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGCTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAAGAGCTCGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGAAACCTTTTAGGGGAAGACTTAGGCCCACTGAATATCAAAGAACTTGAGCATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAGGAGCAGATGTTAGTAGAAGCAAACAGATCCTTGACAGTGAAGCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTGGTCCAGAGAATTCTCACTCTCATTCTCACTCTCAGGGCTTCTTCCAACCATTGGAATGCAACCCTACACTACATATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA
Predicted protein sequences of Glyma.18g273500
>Glyma.18g273500.1.p sequence-type=predicted peptide transcript=Glyma.18g273500.1 locus=Glyma.18g273500 ID=Glyma.18g273500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNIKELEHLERQLDSSLKQVRSTKTQFMLDQLSDLQTKEQMLVEANRSLTVKLEEINSRNHYRQSWEAGDQSMPYGGGGPENSHSHSHSQGFFQPLECNPTLHIGPDYRYNAVASDQITATTQPQQVSGFIPGWML*

>Glyma.18g273500.2.p sequence-type=predicted peptide transcript=Glyma.18g273500.2 locus=Glyma.18g273500 ID=Glyma.18g273500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNIKELEHLERQLDSSLKQVRSTKTQFMLDQLSDLQTKEQMLVEANRSLTVKLEEINSRNHYRQSWEAGDQSMPYGGGGPENSHSHSHSQGFFQPLECNPTLHIGPDYRYNAVASDQITATTQPQQVSGFIPGWML*






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