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Report for Sequence Feature Glyma.18g270500

Feature Type:gene_model
Chromosome:Gm18
Start:55406315
stop:55409725
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g270500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56500.1AT TCP-1/cpn60 chaperonin family protein JGI N/AIEA
GO:0006096GO-bp glycolysis JGI N/AIEA
GO:0044267GO-bp cellular protein metabolic process JGI N/AIEA
GO:0000015GO-cc phosphopyruvate hydratase complex JGI N/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0004634GO-mf phosphopyruvate hydratase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR11353Panther CHAPERONIN JGI N/AIEA
PTHR11353:SF8Panther CHAPERONIN 60 SUBUNIT BETA 1, CHLOROPLASTIC-RELATED JGI N/AIEA
PF00113PFAM Enolase, C-terminal TIM barrel domain JGI N/AIEA
PF00118PFAM TCP-1/cpn60 chaperonin family JGI N/AIEA

Expression Patterns of Glyma.18g270500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g270500 not represented in the dataset
Glyma.18g270500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g270500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g50595 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g270500
>Glyma.18g270500.1 sequence-type=CDS polypeptide=Glyma.18g270500.1.p locus=Glyma.18g270500 ID=Glyma.18g270500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTGTCCCAATTGGAGCAAGCAAATTTGAGGAAGCATTGCGAATGGGCACCGAGACCTATCATCACTTAAAGGTTGAAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCTAAGAATGCTCGTGTCAATGATAGTGTTGTCAGTGAGAAGGTATTGTCCAGTGACAATCCAGGATATGGATATAATGCTGCCACTGGTAAATATGAAGATCTGATGTCTGCTGGGATCATTGATCCAACAAAGGTGAGAGCAACTGTTGCAGAGCTTCAAAATGTTGTTCGTGTATTTAGTCAGTTGTGTGCTGCTTCCAACCTACATATTCACGGGTTTCATCAAAAGAATGTTGGATACTGCAATTCGATAATCATATTGGCATCCATTTCAGCTCCACCTGCACATAAAGGTCATTTTAGGTTCATGCTTAATTATCTACACTTTCTGTTCAACATTTACATACATAGATAA
Predicted protein sequences of Glyma.18g270500
>Glyma.18g270500.1.p sequence-type=predicted peptide transcript=Glyma.18g270500.1 locus=Glyma.18g270500 ID=Glyma.18g270500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIVPIGASKFEEALRMGTETYHHLKVEADIVKRALSYPLKLIAKNARVNDSVVSEKVLSSDNPGYGYNAATGKYEDLMSAGIIDPTKVRATVAELQNVVRVFSQLCAASNLHIHGFHQKNVGYCNSIIILASISAPPAHKGHFRFMLNYLHFLFNIYIHR*






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