Glyma.18g266400

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g266400

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55076548
stop:	55086297
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g266400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29390.1	AT	RS2-interacting KH protein	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
KOG1960	KOG	Predicted RNA-binding protein, contains KH domains	JGI	N/A	IEA
PTHR15744	Panther	BLOM7	JGI	N/A	IEA

Expression Patterns of Glyma.18g266400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g266400

Paralog	Evidence	Comments
Glyma.08g245100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g266400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g50140	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g266400

Limit To All Plant Sequences

>Glyma.18g266400.2 sequence-type=transcript locus=Glyma.18g266400 ID=Glyma.18g266400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCCATCTGGCGTCACGCAACTGTACGACGTTAGGCGGTAGGCACAAAACCCCGTTTCACACTTTGACCGACCAATCGCGTTCGTTCCAACCCAACACCGACGCTCGCGTGAATCCTTTTTCGTTTTCGGGTATCGAAAACGAAGAAGCAAAGAGAACCAAAGCGCCACGCAATTGCActtcttcttcttcttcttcttcttcttcttcttcttcttTGGCAACTCAGAATCGCTTAAACAATGACAGAGGATAGCATCGTTAGGGTTTCTTCTTCCAACGAAACCTCCGCGGCCAACGAGGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGACAGTCCCTGGAGCACTCCCTTTGAGCAATGCCGTGACTCTTGGAGGGGTTGCATTTCCCGCCATGGCTCCGGTGATCTCCGGCACTCTTTTGACAAATCCTCTGgcagcttctgctcagcttccgcaacatgcagctgcagctgctgttgccgcgcaAAAGTTGAATCAACATAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAAACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGAAAGTATCGGCTGCCTAATGCACCACATGATGGAGAGAAGCCACTGTACCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATTCTCAAACAGGTGCAAAATTCACAGTCAATTTCTTCCGTCACACCTTCCGCTTTGGTTAATGGAGTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCATTGAACATTGTTGCTCGTATACGTGGACCAAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCGACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTCAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGCATACACTGCTGTTCCACCTCCCCAGCAGGTATATAGCGCTGTTCCACCACCCCAGCAGGTTTATAGTGGCCCTTCTTTGTTGAAGCAGATTCCTGCTGCCATTTCACCCCCACAAGTTTATAGTGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTGCCAGCCTAATCACTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTGCCCTCACTTTGGGGACTACACCCCAATCTATAAGACATTTAAGCTCTGGGCCTCAAGCAAACATGACTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGCGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTTGCATCAACAGTTGCTCCCACAACATCAGCATCAAACAGAGGATCCAAGTCAACCTTAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAGTTTCAAGAATTGCCAGTTGGTTCAAAAGACACAACAAAACTCAATCAGGTATTTTCTCTGACCTTCTATGAAGCAAAAAGCCTGACACTGGACCTGTCTGTTGGGCCATTGGTTTGTATGTTTGACAGGGTTTTCAGTTTTGGAGGAGTAGTAGGGTGCTTGTGGCTTCACAGCATATGCCCTTTCCAATCCAAGATGTTATTCTAATATTTTCCTTCATTGGTAAAATTGCTGCAAAAGATGTTGTGGCATGCTTTTCAGCCATGCCCTCCTCTAGTCCTGCATATATGGACTGTCAATTTCCTGAAGAAAAGGGTTTACCATACCAGCACCAAATTGATGCCAATCCTTTAAATTGAAATAAAGACAAGTTAGAGATAGGAGAAAATATAAAACTAAGGAATGAGATATCATAGCAAGGTATAATAAAAAAGGAATAAAATAAAAATTGTATGTATGGACAAAGTAAATTAAAAAAGCTCTTTCCCATGATTGGTTATCCTTTGAAGAGACACTCTTAGAACATCTTACACCACCATGAAGTCTTGCTAGACATAATCCCAAGTCCTTTGAAATGATTCATAAAGAGAAAGAGATGAAAACTTGCATCTTTTGTGCTACCAATCAATCCATTCCTGACCAAAAAATTGAGTTTCAAgtgtcactattaaacccattgatcactaaaatatccagttgtgtGCAAGATTTTTTTTCTTCTTATTTTACATCAATGCTGCATTCGGTATTGGGTCTCAAACCCTATTATCAGGAAAATTTGAGCTGCAGATTTACATTTATCTTTACATTATCTATTGGGAGCTTGACAATATATTCCTATGCACATATCTTAATGTATTATCTATCCGTTTACTCCATCTGGCTAGTTTTTTTTACTTTCCTGGTTTTTATTATCATGTATGTAACAGTATAGTAGATCATTCTAGAATGATACACTACTAACAAGTCACTGCCCGTTTATCCCCTTGTTTGTTTTACCTCGTTTtttgtattcgtttttctcgtttgtagttcagtgttaatttgactttgtagtttgGCATGTTGAAACAATTAATGAAGTATCTGATTCAAAAGTTGTGTTTGGGTTTTTGTTTTCTCCCACTCTAACTCAATTGCAGAGATTGCAACCTCTAAAAACTAATGAACAATCTGATGGTCCGGTTGTGAGGAATATATCAACAATGCCTGCCCCTAAGAAGTTGGTTCAGCCATCATCCAATGGAATGCCACCACCTCTACTAAGAACCATGCCCCCACCACCACCTCCACCTAAATTTTGTGGTCCATCTGAAGTTAAAGTACAGGCCAAGAACAAGACTTTGCTTAAGACAAAATCTGATGCAGTTCCTGATACTTTGGTCAAGCTAATGGAATATGGAGAGGAGGATGATGATGATATTGATTCTAGTGAGGAATCACTTCCTCATGACGCCGGAGCAACTGGGGTTCAAAAGCCTTTCTGGGCTTTATGAGCTACAAGGTGCATATTGGACTATATATGTAAATATTTATTGTTTGGGTTGGGACTAGTTCTTGCTGGTTACATACTCTTCTTCCCGGGGTGGAAAGGGAAGCCCTTAGCATGATTTTTGGAGCCAAATAATTTGGTTGAGTAGCACTTTAAAGGTTTTAGTTGCCCATTCTCATATGCTTCGTAAGAGAGGTTTATATGTTGTAATTTTTTGGCCCTATTTGAGTAAGCATGTACCGGTAGTCTCTTTTTAGTGGTTTAGTAGGCCACTAAAGTAACGATGCTGTGATAAGGGACAGTTTTTTCCTTCTTCCCCCCATTGTTAATTATTCATCCTGGCTGAATGAAACGAAGCTACCAGGTTAGATGGAACAAGCAATTGCAAAAGCGCACACAAACACACACACATTATTATTTTTCCATGGGTTATCATCTTCACACACATCTGCACCCGGTTCAATGATTTAAAAACACAAGTTGTATTGGATGTGATATAAATTGCTCAAAATTGTGTATAATATAAATTAAATCATATT

Coding sequences of Glyma.18g266400

Limit To All Plant Sequences

>Glyma.18g266400.1 sequence-type=CDS polypeptide=Glyma.18g266400.1.p locus=Glyma.18g266400 ID=Glyma.18g266400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGAGGATAGCATCGTTAGGGTTTCTTCTTCCAACGAAACCTCCGCGGCCAACGAGGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGACAGTCCCTGGAGCACTCCCTTTGAGCAATGCCGTGACTCTTGGAGGGGTTGCATTTCCCGCCATGGCTCCGGTGATCTCCGGCACTCTTTTGACAAATCCTCTGGCAGCTTCTGCTCAGCTTCCGCAACATGCAGCTGCAGCTGCTGTTGCCGCGCAAAAGTTGAATCAACATAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAAACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGAAAGTATCGGCTGCCTAATGCACCACATGATGGAGAGAAGCCACTGTACCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATTCTCAAACAGGTGCAAAATTCACAGTCAATTTCTTCCGTCACACCTTCCGCTTTGGTTAATGGAGTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCATTGAACATTGTTGCTCGTATACGTGGACCAAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCGACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTCAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGCATACACTGCTGTTCCACCTCCCCAGCAGGTATATAGCGCTGTTCCACCACCCCAGCAGGTTTATAGTGGCCCTTCTTTGTTGAAGCAGATTCCTGCTGCCATTTCACCCCCACAAGTTTATAGTGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTGCCAGCCTAATCACTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTGCCCTCACTTTGGGGACTACACCCCAATCTATAAGACATTTAAGCTCTGGGCCTCAAGCAAACATGACTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGCGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTTGCATCAACAGTTGCTCCCACAACATCAGCATCAAACAGAGGATCCAAGTCAACCTTAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAGTTTCAAGAATTGCCAGTTGGTTCAAAAGACACAACAAAACTCAATCAGAGATTGCAACCTCTAAAAACTAATGAACAATCTGATGGTCCGGTTGTGAGGAATATATCAACAATGCCTGCCCCTAAGAAGTTGGTTCAGCCATCATCCAATGGAATGCCACCACCTCTACTAAGAACCATGCCCCCACCACCACCTCCACCTAAATTTTGTGGTCCATCTGAAGTTAAAGTACAGGCCAAGAACAAGACTTTGCTTAAGACAAAATCTGATGCAGTTCCTGATACTTTGGTCAAGCTAATGGAATATGGAGAGGAGGATGATGATGATATTGATTCTAGTGAGGAATCACTTCCTCATGACGCCGGAGCAACTGGGGTTCAAAAGCCTTTCTGGGCTTTATGA

>Glyma.18g266400.2 sequence-type=CDS polypeptide=Glyma.18g266400.2.p locus=Glyma.18g266400 ID=Glyma.18g266400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGAGGATAGCATCGTTAGGGTTTCTTCTTCCAACGAAACCTCCGCGGCCAACGAGGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGACAGTCCCTGGAGCACTCCCTTTGAGCAATGCCGTGACTCTTGGAGGGGTTGCATTTCCCGCCATGGCTCCGGTGATCTCCGGCACTCTTTTGACAAATCCTCTGGCAGCTTCTGCTCAGCTTCCGCAACATGCAGCTGCAGCTGCTGTTGCCGCGCAAAAGTTGAATCAACATAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAAACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGAAAGTATCGGCTGCCTAATGCACCACATGATGGAGAGAAGCCACTGTACCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATTCTCAAACAGGTGCAAAATTCACAGTCAATTTCTTCCGTCACACCTTCCGCTTTGGTTAATGGAGTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCATTGAACATTGTTGCTCGTATACGTGGACCAAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCGACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTCAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGCATACACTGCTGTTCCACCTCCCCAGCAGGTATATAGCGCTGTTCCACCACCCCAGCAGGTTTATAGTGGCCCTTCTTTGTTGAAGCAGATTCCTGCTGCCATTTCACCCCCACAAGTTTATAGTGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTGCCAGCCTAATCACTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTGCCCTCACTTTGGGGACTACACCCCAATCTATAAGACATTTAAGCTCTGGGCCTCAAGCAAACATGACTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGCGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTTGCATCAACAGTTGCTCCCACAACATCAGCATCAAACAGAGGATCCAAGTCAACCTTAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAGTTTCAAGAATTGCCAGTTGGTTCAAAAGACACAACAAAACTCAATCAGGTATTTTCTCTGACCTTCTATGAAGCAAAAAGCCTGACACTGGACCTGTCTGTTGGGCCATTGGTTTGTATGTTTGACAGGGTTTTCAGTTTTGGAGGAGTAGTAGGGTGCTTGTGGCTTCACAGCATATGCCCTTTCCAATCCAAGATGTTATTCTAA

Predicted protein sequences of Glyma.18g266400

Limit To All Plant Sequences

>Glyma.18g266400.1.p sequence-type=predicted peptide transcript=Glyma.18g266400.1 locus=Glyma.18g266400 ID=Glyma.18g266400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEDSIVRVSSSNETSAANEASQTRQRKKRKWDQPAESLMPVGMTVPGALPLSNAVTLGGVAFPAMAPVISGTLLTNPLAASAQLPQHAAAAAVAAQKLNQHKIQDELIIAREIVINDAESSVRYKLTKRQTQEEIQRCTGAIVITRGKYRLPNAPHDGEKPLYLHISAGAHIKETAERILAVDRAAAMIEEILKQVQNSQSISSVTPSALVNGVKMLSTCVFLGFDADPSLNIVARIRGPNDQYINHIMNETGATVVLRGRGSGNNECLNGEDGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGASRVSSCKVYSAVPPPQQAYTAVPPPQQVYSAVPPPQQVYSGPSLLKQIPAAISPPQVYSAVPPPQQLLTGVQSSGIDLEAGASLITSSMSAAGVLTPVPPASLVGVTGVTGALTLGTTPQSIRHLSSGPQANMTGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALRHSPPVASTVAPTTSASNRGSKSTLSSDLEKEKRPPQRRKFQELPVGSKDTTKLNQRLQPLKTNEQSDGPVVRNISTMPAPKKLVQPSSNGMPPPLLRTMPPPPPPPKFCGPSEVKVQAKNKTLLKTKSDAVPDTLVKLMEYGEEDDDDIDSSEESLPHDAGATGVQKPFWAL*

>Glyma.18g266400.2.p sequence-type=predicted peptide transcript=Glyma.18g266400.2 locus=Glyma.18g266400 ID=Glyma.18g266400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEDSIVRVSSSNETSAANEASQTRQRKKRKWDQPAESLMPVGMTVPGALPLSNAVTLGGVAFPAMAPVISGTLLTNPLAASAQLPQHAAAAAVAAQKLNQHKIQDELIIAREIVINDAESSVRYKLTKRQTQEEIQRCTGAIVITRGKYRLPNAPHDGEKPLYLHISAGAHIKETAERILAVDRAAAMIEEILKQVQNSQSISSVTPSALVNGVKMLSTCVFLGFDADPSLNIVARIRGPNDQYINHIMNETGATVVLRGRGSGNNECLNGEDGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGASRVSSCKVYSAVPPPQQAYTAVPPPQQVYSAVPPPQQVYSGPSLLKQIPAAISPPQVYSAVPPPQQLLTGVQSSGIDLEAGASLITSSMSAAGVLTPVPPASLVGVTGVTGALTLGTTPQSIRHLSSGPQANMTGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALRHSPPVASTVAPTTSASNRGSKSTLSSDLEKEKRPPQRRKFQELPVGSKDTTKLNQVFSLTFYEAKSLTLDLSVGPLVCMFDRVFSFGGVVGCLWLHSICPFQSKMLF*

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