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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15530.1 | AT | biotin carboxyl carrier protein 2 | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006631 | GO-bp | fatty acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009317 | GO-cc | acetyl-CoA carboxylase complex | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0003989 | GO-mf | acetyl-CoA carboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| PTHR23151 | Panther | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | JGI | N/A | IEA |
| PTHR23151:SF25 | Panther | JGI | N/A | IEA | |
| PF00364 | PFAM | Biotin-requiring enzyme | JGI | N/A | IEA |
| PWY-7388 | SoyCyc9 | octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | Plant Metabolic Network | ISS | |
| GN7V-46696 | SoyCyc9-rxn | acetyl-CoA carboxylase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ACCB-2 | biotin carboxyl carrier protein subunit |
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Glyma.18g265300 not represented in the dataset |
Glyma.18g265300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g50020 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g265300.1 sequence-type=CDS polypeptide=Glyma.18g265300.1.p locus=Glyma.18g265300 ID=Glyma.18g265300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGTCATTCACGATCCCTTGCCCCAAGTGCGTTGTTGTTCCTTTTGCTCATTTGGGACTGAACTCTCAGACCCAGCAACGGAACGCGCTGGGGTTGAAGAAATCGCTCTCATTTGGATCTTTGAGTAGTGATTCGGCGCCAAATGGGATTCAGTGCCTTAACAAGAAGCAATCTTCTGTCTGGAAGCTTCAAGCACAACCAAAAGAGGCTGTTACTGTTGAAAATTCTGCACCTGTACAGGTCAATGGACCTAAAATTGCTCCACCAGAAGAGAAGGATGACCATAATGGAAAACCCTCTGGTCCAAGCACTTCTGCTGATGCATCTTCAATTTCTGCATTTATGAACCAAGTTTCAGATCTTGTTAAACTTGTGGACTCTAAAGATATTATGGAGCTGCAACTCAAGCAAGCAAACTGTGAACTCGTGATAAGAAAGAAGGAAGCTTTGCTGCCTCCACCAGCTACATTTGTAGCTCCAGTGTCACAACCATTTCCATATCCCACAAATTCTCTTCCAGCAGCACCACCTCCAGTTGCTACTTCCACTCCTGCAAGTTCTCCATCTTCAAAAGCAGCTCCTGCCTTACCTCCTGCAAAAGCAAGCAAATCATCTCATCCGGCACTGAAATGTCCAATGGCAGGAACCTTTTATCGAAGTCCAGCACCTGGCGAACCTCCATTTGTCAAGGTGGGAGATAAAGTGCAGAAGGGGCAGGTCATTTGCATTATTGAGGCTATGAAACTAATGAATGAAATTGAAGCTGATCAATCTGGAACAGTAGCTGAGGTTGTAGCAGAGGATGGGAAACCAGTCAGTGTAGACACGCCTCTTTTTGTAATTGTACCATGA
>Glyma.18g265300.1.p sequence-type=predicted peptide transcript=Glyma.18g265300.1 locus=Glyma.18g265300 ID=Glyma.18g265300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASFTIPCPKCVVVPFAHLGLNSQTQQRNALGLKKSLSFGSLSSDSAPNGIQCLNKKQSSVWKLQAQPKEAVTVENSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADASSISAFMNQVSDLVKLVDSKDIMELQLKQANCELVIRKKEALLPPPATFVAPVSQPFPYPTNSLPAAPPPVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGEPPFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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