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Report for Sequence Feature Glyma.18g264400

Feature Type:gene_model
Chromosome:Gm18
Start:54954462
stop:54961006
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g264400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15450.1AT casein lytic proteinase B3 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0009408GO-bp response to heat EnsemblGenomesN/AIEA
GO:0016485GO-bp protein processing EnsemblGenomesN/AIEA
GO:0019538GO-bp protein metabolic process EnsemblGenomesN/AIEA
GO:0019538GO-bp protein metabolic process JGI N/AIEA
GO:0042026GO-bp protein refolding EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008134GO-mf transcription factor binding JGI N/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
KOG1051 KOG Chaperone HSP104 and related ATP-dependent Clp proteases JGI N/AIEA
PTHR11638Panther ATP-DEPENDENT CLP PROTEASE JGI N/AIEA
PTHR11638:SF18Panther HEAT SHOCK PROTEIN 104 JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF02861PFAM Clp amino terminal domain JGI N/AIEA
PF07724PFAM AAA domain (Cdc48 subfamily) JGI N/AIEA
PF10431PFAM C-terminal, D2-small domain, of ClpB protein JGI N/AIEA

Expression Patterns of Glyma.18g264400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g264400
ParalogEvidenceComments
Glyma.08g242100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g264400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g49930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g264400
>Glyma.18g264400.1 sequence-type=CDS polypeptide=Glyma.18g264400.1.p locus=Glyma.18g264400 ID=Glyma.18g264400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCCACGTCGTCGTTTTCTCTCTCCCACGCCGTTGTTCCCTTCTCATGCAACACAAAACATGGTCATTTATCTCACAACCTCCTCTATCTCTCATTCGCAAAACCCATTTCCCTAAAGCCCCTCCAATCGCTTCCCTTCAACAAAAGACACCCTTTTGCAAATGGGTTTCAGAGAATTCGAAGAAATTCCTCACCTTTCATCGTTCGCTGTGAAGCTTCAAGTGGAAGGATTACGCAGCAAGAGTTCACAGAGATGGCGTGGCAGGCAATAGTTTCGTCACCAGAGGTGGCCAAGGAGAACAAGCATCAGATTGTGGAGACAGAGCACTTGATGAAGGCTTTGTTGGAGCAGAAGAATGGACTTGCTCGCAGGATCTTTTCCAAGGTTGGGGTGGATAACACTCGCCTTCTAGAAGCTACTGATAAGTACATTCAGCGGCAACCCAAGGTTCTAGGGGAATCCTCTGGTTCAATGTTGGGCCGTGATTTGGAGGCATTGATTCAGAGAGCTAGGGACCACAAGAAAAAGTATGGGGATTCATTTGTTTCAGTTGAGCACTTGGTTCTTGCTTTTACCCAAGATCAACGGTTTGGGAAGCAATTCTTCAGAGATTTTCAAATATCTGAGCCAGCTCTAAAATCTGCAATAGAGTCTGTTAGGGGACGTCAGTCAGTTATTGATCAAGATCCCGAAGGAAAGTATGAAGCCTTGGAAAAATATGGAAAAGATTTGACCGCAATGGCAAAAGCTGGAAAACTTGACCCAGTCATAGGAAGAGATGATGAAATACGAAGGTGCATTCAAATTCTCTCCAGGAGGACAAAGAACAATCCCGTGCTAATTGGTGAACCTGGTGTTGGAAAGACCGCCATTTCTGAAGGACTGGCTCAGAGAATAGTGCAAGGAGATGTTCCTCAAGCTTTAATGGACCGTAGGCTTATATCTCTGGATATGGGAGCACTTATTGCTGGAGCGAAGTACCGGGGAGAATTCGAGGATAGGCTGAAAGCTGTACTAAAAGAAGTGACAGAATCTGATGGTCAGACTATCCTTTTCATTGACGAGATTCATACAGTTGTTGGGGCAGGAGCCACAAATGGTGCTATGGATGCTGGTAATCTCTTAAAACCTATGCTTGGTCGGGGTGAGCTGCGATGTATTGGTGCAACAACACTGGACGAGTATCGGAAGTATATCGAGAAGGACCCAGCACTAGAGCGTCGCTTCCAACAAGTTTATGTTGACCAACCTACAGTTGAAGATACAATTTCAATACTAAGGGGACTGCGGGAAAGGTATGAACTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAGCTGCAATTCTCTCAGATAGATATATCAGTGGAAGATTTTTGCCTGACAAAGCTATTGACCTGGTTGATGAGGCAGCTGCCAAACTGAAAATGGAAATCACTTCTAAACCTACTGCACTTGATGAGATCAATAGATCAGTCCTGAAACTAGAGATGGAGAGACTCTCTCTCATGAATGATACAGATAAGGCTTCTAAAGATAGGCTGAATCGTCTTGAGGCAGAGCTTTCTCTCTTAAAAGAGAAACAGGCTGAGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTAATGACTCGTATTCAATCAATCAAAGAAGAGATAGACAGAGTGAATCTTGAGATCCAACAGGCTGAACGGGAGTATGATCTTAATCGTGCTGCTGAATTAAAGTATGGCAGTCTTAACTCCTTGCAACGGCAACTTGAAAGTGCCGAGAAGGAGTTAGACGAATATATGAACTCTGGGAAGTCTATGCTGAGAGAGGAAGTTACGGGAAATGATATTGCTGAAATTGTAAGCAAGTGGACTGGTATCCCTGTTTCAAAACTTCAACAATCAGAGAGGGAGAAGTTGTTGCATTTAGAGGAAGTGCTTCATAAGCGTGTTGTAGGCCAAGACCCTGCTGTTAAGGCAATTGCTGAGGCTATCCAACGTTCAAGAGCAGGTCTTTCGGATCCTCATCGTCCAATTGCCAGCTTCATGTTTATGGGACCTACAGGTGTAGGAAAGACAGAGCTGGCTAAGGCACTTGCAGCCTACTTGTTCAACACTGAAGAAGCTCTTGTACGGATTGATATGAGCGAGTACATGGAAAAACATGCTGTTTCAAGATTGATTGGGGCTCCACCTGGATATGTTGGGTACGAAGAAGGAGGGCAACTTACTGAGATAGTTCGCCGCAGACCATATGCTGTTATTTTGTTCGATGAGATTGAGAAGGCGCACGCCGATGTCTTCAATGTATTTCTTCAAATTTTGGATGATGGAAGAGTAACCGACTCACAGGGTCGCACAGTAAGTTTTACCAACACTGTTATCATTATGACCTCAAATGTTGGATCACAGTACATCTTGAACACAGATGACGACACCACGCCAAAAGAGTTGGCTTATGAAACCATAAAACAACGTGTAATGGATGCTGCAAGATCCATCTTCCGCCCTGAGTTTATGAATAGAGTTGACGAATATATTGTTTTCCAGCCTCTAGACCGTGAACAAATAAGTAGCATTGTCAGATTACAGTTGGAGCGCGTGCAGAAGAGAATTGCAGATCGCAAGATGAAAATCCAAGTGACGGATGCTGCTGTTCAACTTCTTGGAAGTTTGGGGTATGACCCCAACTATGGTGCTAGGCCAGTCAAGCGAGTGATTCAGCAGAATGTGGAGAATGAACTCGCCAAGGGTATTCTCAGAGGAGAATTTAAGGAAGAAGATGCAATTATAATAGACACAGAACTCACAGCATTTACCAACGGCCAACTTCCCCAGCAAAAGCTTGTTTTTAAGAAACTTGCAGCTGATTCAGAATCTACCCCTCAAGACACCTTGGAACCCTTCCCACAGGCTCCATGA
Predicted protein sequences of Glyma.18g264400
>Glyma.18g264400.1.p sequence-type=predicted peptide transcript=Glyma.18g264400.1 locus=Glyma.18g264400 ID=Glyma.18g264400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTSSFSLSHAVVPFSCNTKHGHLSHNLLYLSFAKPISLKPLQSLPFNKRHPFANGFQRIRRNSSPFIVRCEASSGRITQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKVGVDNTRLLEATDKYIQRQPKVLGESSGSMLGRDLEALIQRARDHKKKYGDSFVSVEHLVLAFTQDQRFGKQFFRDFQISEPALKSAIESVRGRQSVIDQDPEGKYEALEKYGKDLTAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMDRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLMNDTDKASKDRLNRLEAELSLLKEKQAELTEQWEHEKSVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNSLQRQLESAEKELDEYMNSGKSMLREEVTGNDIAEIVSKWTGIPVSKLQQSEREKLLHLEEVLHKRVVGQDPAVKAIAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAAYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHADVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDDTTPKELAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDREQISSIVRLQLERVQKRIADRKMKIQVTDAAVQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKEEDAIIIDTELTAFTNGQLPQQKLVFKKLAADSESTPQDTLEPFPQAP*






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