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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15450.1 | AT | casein lytic proteinase B3 | JGI | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | JGI | N/A | IEA |
| GO:0009408 | GO-bp | response to heat | EnsemblGenomes | N/A | IEA |
| GO:0016485 | GO-bp | protein processing | EnsemblGenomes | N/A | IEA |
| GO:0019538 | GO-bp | protein metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019538 | GO-bp | protein metabolic process | JGI | N/A | IEA |
| GO:0042026 | GO-bp | protein refolding | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008134 | GO-mf | transcription factor binding | JGI | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | JGI | N/A | IEA |
| KOG1051 | KOG | Chaperone HSP104 and related ATP-dependent Clp proteases | JGI | N/A | IEA |
| PTHR11638 | Panther | ATP-DEPENDENT CLP PROTEASE | JGI | N/A | IEA |
| PTHR11638:SF18 | Panther | HEAT SHOCK PROTEIN 104 | JGI | N/A | IEA |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | N/A | IEA |
| PF02861 | PFAM | Clp amino terminal domain | JGI | N/A | IEA |
| PF07724 | PFAM | AAA domain (Cdc48 subfamily) | JGI | N/A | IEA |
| PF10431 | PFAM | C-terminal, D2-small domain, of ClpB protein | JGI | N/A | IEA |
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Glyma.18g264400 not represented in the dataset |
Glyma.18g264400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g242100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g49930 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g264400.1 sequence-type=CDS polypeptide=Glyma.18g264400.1.p locus=Glyma.18g264400 ID=Glyma.18g264400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTCCACGTCGTCGTTTTCTCTCTCCCACGCCGTTGTTCCCTTCTCATGCAACACAAAACATGGTCATTTATCTCACAACCTCCTCTATCTCTCATTCGCAAAACCCATTTCCCTAAAGCCCCTCCAATCGCTTCCCTTCAACAAAAGACACCCTTTTGCAAATGGGTTTCAGAGAATTCGAAGAAATTCCTCACCTTTCATCGTTCGCTGTGAAGCTTCAAGTGGAAGGATTACGCAGCAAGAGTTCACAGAGATGGCGTGGCAGGCAATAGTTTCGTCACCAGAGGTGGCCAAGGAGAACAAGCATCAGATTGTGGAGACAGAGCACTTGATGAAGGCTTTGTTGGAGCAGAAGAATGGACTTGCTCGCAGGATCTTTTCCAAGGTTGGGGTGGATAACACTCGCCTTCTAGAAGCTACTGATAAGTACATTCAGCGGCAACCCAAGGTTCTAGGGGAATCCTCTGGTTCAATGTTGGGCCGTGATTTGGAGGCATTGATTCAGAGAGCTAGGGACCACAAGAAAAAGTATGGGGATTCATTTGTTTCAGTTGAGCACTTGGTTCTTGCTTTTACCCAAGATCAACGGTTTGGGAAGCAATTCTTCAGAGATTTTCAAATATCTGAGCCAGCTCTAAAATCTGCAATAGAGTCTGTTAGGGGACGTCAGTCAGTTATTGATCAAGATCCCGAAGGAAAGTATGAAGCCTTGGAAAAATATGGAAAAGATTTGACCGCAATGGCAAAAGCTGGAAAACTTGACCCAGTCATAGGAAGAGATGATGAAATACGAAGGTGCATTCAAATTCTCTCCAGGAGGACAAAGAACAATCCCGTGCTAATTGGTGAACCTGGTGTTGGAAAGACCGCCATTTCTGAAGGACTGGCTCAGAGAATAGTGCAAGGAGATGTTCCTCAAGCTTTAATGGACCGTAGGCTTATATCTCTGGATATGGGAGCACTTATTGCTGGAGCGAAGTACCGGGGAGAATTCGAGGATAGGCTGAAAGCTGTACTAAAAGAAGTGACAGAATCTGATGGTCAGACTATCCTTTTCATTGACGAGATTCATACAGTTGTTGGGGCAGGAGCCACAAATGGTGCTATGGATGCTGGTAATCTCTTAAAACCTATGCTTGGTCGGGGTGAGCTGCGATGTATTGGTGCAACAACACTGGACGAGTATCGGAAGTATATCGAGAAGGACCCAGCACTAGAGCGTCGCTTCCAACAAGTTTATGTTGACCAACCTACAGTTGAAGATACAATTTCAATACTAAGGGGACTGCGGGAAAGGTATGAACTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAGCTGCAATTCTCTCAGATAGATATATCAGTGGAAGATTTTTGCCTGACAAAGCTATTGACCTGGTTGATGAGGCAGCTGCCAAACTGAAAATGGAAATCACTTCTAAACCTACTGCACTTGATGAGATCAATAGATCAGTCCTGAAACTAGAGATGGAGAGACTCTCTCTCATGAATGATACAGATAAGGCTTCTAAAGATAGGCTGAATCGTCTTGAGGCAGAGCTTTCTCTCTTAAAAGAGAAACAGGCTGAGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTAATGACTCGTATTCAATCAATCAAAGAAGAGATAGACAGAGTGAATCTTGAGATCCAACAGGCTGAACGGGAGTATGATCTTAATCGTGCTGCTGAATTAAAGTATGGCAGTCTTAACTCCTTGCAACGGCAACTTGAAAGTGCCGAGAAGGAGTTAGACGAATATATGAACTCTGGGAAGTCTATGCTGAGAGAGGAAGTTACGGGAAATGATATTGCTGAAATTGTAAGCAAGTGGACTGGTATCCCTGTTTCAAAACTTCAACAATCAGAGAGGGAGAAGTTGTTGCATTTAGAGGAAGTGCTTCATAAGCGTGTTGTAGGCCAAGACCCTGCTGTTAAGGCAATTGCTGAGGCTATCCAACGTTCAAGAGCAGGTCTTTCGGATCCTCATCGTCCAATTGCCAGCTTCATGTTTATGGGACCTACAGGTGTAGGAAAGACAGAGCTGGCTAAGGCACTTGCAGCCTACTTGTTCAACACTGAAGAAGCTCTTGTACGGATTGATATGAGCGAGTACATGGAAAAACATGCTGTTTCAAGATTGATTGGGGCTCCACCTGGATATGTTGGGTACGAAGAAGGAGGGCAACTTACTGAGATAGTTCGCCGCAGACCATATGCTGTTATTTTGTTCGATGAGATTGAGAAGGCGCACGCCGATGTCTTCAATGTATTTCTTCAAATTTTGGATGATGGAAGAGTAACCGACTCACAGGGTCGCACAGTAAGTTTTACCAACACTGTTATCATTATGACCTCAAATGTTGGATCACAGTACATCTTGAACACAGATGACGACACCACGCCAAAAGAGTTGGCTTATGAAACCATAAAACAACGTGTAATGGATGCTGCAAGATCCATCTTCCGCCCTGAGTTTATGAATAGAGTTGACGAATATATTGTTTTCCAGCCTCTAGACCGTGAACAAATAAGTAGCATTGTCAGATTACAGTTGGAGCGCGTGCAGAAGAGAATTGCAGATCGCAAGATGAAAATCCAAGTGACGGATGCTGCTGTTCAACTTCTTGGAAGTTTGGGGTATGACCCCAACTATGGTGCTAGGCCAGTCAAGCGAGTGATTCAGCAGAATGTGGAGAATGAACTCGCCAAGGGTATTCTCAGAGGAGAATTTAAGGAAGAAGATGCAATTATAATAGACACAGAACTCACAGCATTTACCAACGGCCAACTTCCCCAGCAAAAGCTTGTTTTTAAGAAACTTGCAGCTGATTCAGAATCTACCCCTCAAGACACCTTGGAACCCTTCCCACAGGCTCCATGA
>Glyma.18g264400.1.p sequence-type=predicted peptide transcript=Glyma.18g264400.1 locus=Glyma.18g264400 ID=Glyma.18g264400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASTSSFSLSHAVVPFSCNTKHGHLSHNLLYLSFAKPISLKPLQSLPFNKRHPFANGFQRIRRNSSPFIVRCEASSGRITQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKVGVDNTRLLEATDKYIQRQPKVLGESSGSMLGRDLEALIQRARDHKKKYGDSFVSVEHLVLAFTQDQRFGKQFFRDFQISEPALKSAIESVRGRQSVIDQDPEGKYEALEKYGKDLTAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMDRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLMNDTDKASKDRLNRLEAELSLLKEKQAELTEQWEHEKSVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNSLQRQLESAEKELDEYMNSGKSMLREEVTGNDIAEIVSKWTGIPVSKLQQSEREKLLHLEEVLHKRVVGQDPAVKAIAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAAYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHADVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDDTTPKELAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDREQISSIVRLQLERVQKRIADRKMKIQVTDAAVQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKEEDAIIIDTELTAFTNGQLPQQKLVFKKLAADSESTPQDTLEPFPQAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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