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Report for Sequence Feature Glyma.18g262000

Feature Type:gene_model
Chromosome:Gm18
Start:54788366
stop:54790419
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g262000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66370.1AT myb domain protein 113 JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0030154GO-bp cell differentiation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000981GO-mf RNA polymerase II transcription factor activity, sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001135GO-mf transcription factor activity, RNA polymerase II transcription factor recruiting EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0044212GO-mf transcription regulatory region DNA binding EnsemblGenomesN/AIEA
PTHR10641Panther MYB-LIKE DNA-BINDING PROTEIN MYB JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.18g262000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g262000
ParalogEvidenceComments
Glyma.09g234900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g262000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g49690 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g262000
>Glyma.18g262000.1 sequence-type=CDS polypeptide=Glyma.18g262000.1.p locus=Glyma.18g262000 ID=Glyma.18g262000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGATCATCAGGTGTGAGGAAAGGCGCATGGAGTCAATTTGAAGATGACCTTCTCAGAGATTGCGTGAACCTTCATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTAAGATGGTTGAACTATCTAAAACCAAATATCAAGCGGGGAGATTTTAATGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTAATTGCTGGGAGACTTCCGGGAAGAACTTCAAATGATGTTAAGAACTACTGGAACGCCTACATGCGCCGTAAAGTTCACTCTCACAACAAAGACAACAAAATAAAGAAGCAAGAGACCAAATCAACAGTGAAACCCCACGAAGTGATTAAGCCTATTCCTCGAGTTTTAACAAAAACATCCCCATGGTTGCAACGGAAATTCATTAATAGTCCCAAAGTTGGTGTTAGTGAAGAAGGTGCAACATCATCAGAGAATTGGTGGGAGACATTGTTAGCTGACAAGGAAGATAATGCAGTATTTAACAACAACAACAACACGTGCTTCTTTGGTGGGGTGCATGGAGAGCTTAACCTTTGGAACGAAGAGCTTACTTCAATTGATTTTGACTTTGTTACACAAGGTGAACTTGGAGGGATTGTGAACTTTCAAAATCCATAG
Predicted protein sequences of Glyma.18g262000
>Glyma.18g262000.1.p sequence-type=predicted peptide transcript=Glyma.18g262000.1 locus=Glyma.18g262000 ID=Glyma.18g262000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGSSGVRKGAWSQFEDDLLRDCVNLHGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFNEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNAYMRRKVHSHNKDNKIKKQETKSTVKPHEVIKPIPRVLTKTSPWLQRKFINSPKVGVSEEGATSSENWWETLLADKEDNAVFNNNNNTCFFGGVHGELNLWNEELTSIDFDFVTQGELGGIVNFQNP*






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