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Report for Sequence Feature Glyma.18g261600

Feature Type:gene_model
Chromosome:Gm18
Start:54756819
stop:54761872
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g261600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01120.1AT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity JGI N/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG0053 KOG Cystathionine beta-lyases/cystathionine gamma-synthases JGI N/AIEA
PTHR11808Panther TRANS-SULFURATION ENZYME FAMILY MEMBER JGI N/AIEA
PTHR11808:SF14Panther CYSTATHIONINE GAMMA-SYNTHASE, CHLOROPLASTIC-RELATED JGI N/AIEA
PF01053PFAM Cys/Met metabolism PLP-dependent enzyme JGI N/AIEA
PWY-6936SoyCyc9 seleno-amino acid biosynthesis Plant Metabolic Network ISS
PWY-702SoyCyc9 L-methionine biosynthesis II Plant Metabolic Network ISS
PWY-724SoyCyc9 superpathway of L-lysine, L-threonine and L-methionine biosynthesis II Plant Metabolic Network ISS
PWY-801SoyCyc9 homocysteine and cysteine interconversion Plant Metabolic Network ISS
GN7V-61827SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Proteins Associated with Glyma.18g261600
LocusGene SymbolProtein Name
CGS1 cystathionine gamma-synthase 1, chloroplastic

Expression Patterns of Glyma.18g261600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g261600
ParalogEvidenceComments
Glyma.09g235400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g261600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g49660 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g261600
>Glyma.18g261600.2 sequence-type=transcript locus=Glyma.18g261600 ID=Glyma.18g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGGACCCCATCGCAAATCGAAGAGTACAGAGAGATTCGTTTTGGTAGGTATATAGATAGAGGAGAGAGAAACCAAACACAAATCCTTGAAACGACGACGGAAATGGCCGTTTCGAGCTCGCACATGCGTTTCACCTTCGAGTGCCGCTCCGATCCCGATTTCTCGCCACCGCCGCCGTCCTTCGACAACCTCCGCCGCCGTAACTTCCGCTCCTCCGCCGGATCCGGCGCGGCGTTTCACGGCATCTCCTCCCTCATCCTCCGATTCCCTCCCAACTTCCAGCGCCAGCTCAGCACCAAGGCGCGCCGCAATTGTAGCAACATCGGCGTCGCGCAAATTGTCGCCGCTTCGTGGTCGAACAACAGCGACAACTCTCCGgccgccggggctccggcgccgcccgcggccacagcagcggacgccgccacggtgcctctccccgtcgacctcgccgccgccgaggacgtcgtcgtctctgccgcggccgccgAGAACGGGACTGTACAGTTAAACAGTAGTTCTTATTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACTGTGGTTCTGGAGGAGAAGATAAGTATATTGGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGCGTAGTCCTATTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTGACCACTACGGATTGTTACAGGAAGACTAGAATATTCATTGAGACTTTTCTTCCAAAGATGGGGATCACGACCACTGTAATTGATCCAGCAGATGTTGGAGCCTTGGAATCTGCATTGGAGCAGCACAATGTGTCTCTATTCTTCACTGAGTCGCCTACCAATCCATTCCTGAGATGTGTTGACATTAAGCTGGTTTCAGAGCTTTGCCACAAGAAGGGGACTTTGCTCTGTATTGATGGTACATTTGCAACACCATTGAACCAGAAGGCCCTTGCCCTTGGCGCTGATCTGATTCTGCACTCCTTAACAAAATACATGGGTGGACATCATGATGCCCTTGGTGGTTGCATAAGTGGTTCAACTAAGGTGGTTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGGTATCATGGCATTTTGACATGCACACTGTCATGCCTCGTCTCCATGCTATTTAATATAATTTATTATTTTGTTAATTGAAACTTTTAAAGTTGTCAAATGAGATTGTGTATAATTCAATTGAATTCAAATATATAAAAAATGAAATGAATGGTTAACACATGACTTGTTTCTTCATCGACAGCTTATTTTTGTTGCTGATCTGTCTTTTAAACTTTTTTTCCCCTATGTATATTTGTGTATAATGATGGTTGAATTGGGGTTCTACGCAAAAATGAAGTGTATGGTTAAATGTCATATCTTGTTCATCAACAGCATACTTATGTTGGAATATTGTGCACTGCTCCCTATGTACTCTAAAATGTATGTGGTTGTAGCATGATGGATAATGTTTACTAAGCTGTGCCAAGAGAGCAGATGCTGGTTTCTTTTGAATTTTTTTTGTTGTGATGCTCTTAAATGGGAGTCCCTTCATCTGCTATTATCTTGTATATTAATGATAATAAGTAATTAAGTATTATTACTTTTTTGATAGTAGCTTTTAGGATGGAAGCCTAAGTATTTTTGTGGCATAAAATTTCTCTTGAAACAAAACTGTATTCTTCTCTAGGTTCTTCCTTTTTTTTTCCACTTTTTGAATTGTCAAATCAGTTGTTTGTATCTTTTCTCTTCTTTTTGATGTCATTAACAAAGGCATATTCTTATACCATTTTATCATTTTACAGATTCAGTATGTAAACATTTTCATGATTGAGTCCTGTATCTGATGTGGCTTTAATTACATACTATTATTGGCAGGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGATTGATGGAGATCTACATACCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGGGATCTTCCTCAGTCAGAAAGGGCCAAGTATAAGATTTATGACAACCTGGTTCGCTTCAGCTTTGGAGTTGAAGATTTTGAGGATTTGAAGGCTGATGTCCTGCAAGCTCTGGAAGCTATATAGACAGTTTTCCTGATTCACCCATGTTTTTTTTCTTTTAATAATCGTGTTATATGTTCCTTTTCGTTATCGCATCTGGCGATTCAATTGAATTTTGATCGTCTAATGTTCTGTTGGAATTGTGTTTAGATGAATGGTTTCTAATTTGGATGTTGTGAAACTTGTGATGAATGGTTGAAATTGAAACCTCTATTGATATTCATTCCCGCGTTTCCTACAAAAATTAAAAGAAAAATGAATTCTTGAGGCAGGATATATAAGAGAATTTCTTT
Coding sequences of Glyma.18g261600
>Glyma.18g261600.1 sequence-type=CDS polypeptide=Glyma.18g261600.1.p locus=Glyma.18g261600 ID=Glyma.18g261600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGTTTCGAGCTCGCACATGCGTTTCACCTTCGAGTGCCGCTCCGATCCCGATTTCTCGCCACCGCCGCCGTCCTTCGACAACCTCCGCCGCCGTAACTTCCGCTCCTCCGCCGGATCCGGCGCGGCGTTTCACGGCATCTCCTCCCTCATCCTCCGATTCCCTCCCAACTTCCAGCGCCAGCTCAGCACCAAGGCGCGCCGCAATTGTAGCAACATCGGCGTCGCGCAAATTGTCGCCGCTTCGTGGTCGAACAACAGCGACAACTCTCCGGCCGCCGGGGCTCCGGCGCCGCCCGCGGCCACAGCAGCGGACGCCGCCACGGTGCCTCTCCCCGTCGACCTCGCCGCCGCCGAGGACGTCGTCGTCTCTGCCGCGGCCGCCGAGAACGGGACTGTACAGTTAAACAGTAGTTCTTATTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACTGTGGTTCTGGAGGAGAAGATAAGTATATTGGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGCGTAGTCCTATTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTGACCACTACGGATTGTTACAGGAAGACTAGAATATTCATTGAGACTTTTCTTCCAAAGATGGGGATCACGACCACTGTAATTGATCCAGCAGATGTTGGAGCCTTGGAATCTGCATTGGAGCAGCACAATGTGTCTCTATTCTTCACTGAGTCGCCTACCAATCCATTCCTGAGATGTGTTGACATTAAGCTGGTTTCAGAGCTTTGCCACAAGAAGGGGACTTTGCTCTGTATTGATGGTACATTTGCAACACCATTGAACCAGAAGGCCCTTGCCCTTGGCGCTGATCTGATTCTGCACTCCTTAACAAAATACATGGGTGGACATCATGATGCCCTTGGTGGTTGCATAAGTGGTTCAACTAAGGTGGTTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGATTGATGGAGATCTACATACCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGGGATCTTCCTCAGTCAGAAAGGGCCAAGTATAAGATTTATGACAACCTGGTTCGCTTCAGCTTTGGAGTTGAAGATTTTGAGGATTTGAAGGCTGATGTCCTGCAAGCTCTGGAAGCTATATAG

>Glyma.18g261600.2 sequence-type=CDS polypeptide=Glyma.18g261600.2.p locus=Glyma.18g261600 ID=Glyma.18g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGTTTCGAGCTCGCACATGCGTTTCACCTTCGAGTGCCGCTCCGATCCCGATTTCTCGCCACCGCCGCCGTCCTTCGACAACCTCCGCCGCCGTAACTTCCGCTCCTCCGCCGGATCCGGCGCGGCGTTTCACGGCATCTCCTCCCTCATCCTCCGATTCCCTCCCAACTTCCAGCGCCAGCTCAGCACCAAGGCGCGCCGCAATTGTAGCAACATCGGCGTCGCGCAAATTGTCGCCGCTTCGTGGTCGAACAACAGCGACAACTCTCCGGCCGCCGGGGCTCCGGCGCCGCCCGCGGCCACAGCAGCGGACGCCGCCACGGTGCCTCTCCCCGTCGACCTCGCCGCCGCCGAGGACGTCGTCGTCTCTGCCGCGGCCGCCGAGAACGGGACTGTACAGTTAAACAGTAGTTCTTATTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACTGTGGTTCTGGAGGAGAAGATAAGTATATTGGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGCGTAGTCCTATTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTGACCACTACGGATTGTTACAGGAAGACTAGAATATTCATTGAGACTTTTCTTCCAAAGATGGGGATCACGACCACTGTAATTGATCCAGCAGATGTTGGAGCCTTGGAATCTGCATTGGAGCAGCACAATGTGTCTCTATTCTTCACTGAGTCGCCTACCAATCCATTCCTGAGATGTGTTGACATTAAGCTGGTTTCAGAGCTTTGCCACAAGAAGGGGACTTTGCTCTGTATTGATGGTACATTTGCAACACCATTGAACCAGAAGGCCCTTGCCCTTGGCGCTGATCTGATTCTGCACTCCTTAACAAAATACATGGGTGGACATCATGATGCCCTTGGTGGTTGCATAAGTGGTTCAACTAAGGTGGTTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGGTATCATGGCATTTTGACATGCACACTGTCATGCCTCGTCTCCATGCTATTTAA
Predicted protein sequences of Glyma.18g261600
>Glyma.18g261600.1.p sequence-type=predicted peptide transcript=Glyma.18g261600.1 locus=Glyma.18g261600 ID=Glyma.18g261600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSSSHMRFTFECRSDPDFSPPPPSFDNLRRRNFRSSAGSGAAFHGISSLILRFPPNFQRQLSTKARRNCSNIGVAQIVAASWSNNSDNSPAAGAPAPPAATAADAATVPLPVDLAAAEDVVVSAAAAENGTVQLNSSSYSFLKSDASKTIHAAERLGRGIETDGITTPVLNTSAYFFKKTADLIDFKENRQVSYEYGRYGNPTTVVLEEKISILEGAESTVIMASGMCASVVLFMALVPAGGHLVTTTDCYRKTRIFIETFLPKMGITTTVIDPADVGALESALEQHNVSLFFTESPTNPFLRCVDIKLVSELCHKKGTLLCIDGTFATPLNQKALALGADLILHSLTKYMGGHHDALGGCISGSTKVVSQIRTLHHVLGGTLNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAELLEAHPKVKRVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDLHTTIKFIDSLKIPYIAASFGGCESIVDQPAILSYWDLPQSERAKYKIYDNLVRFSFGVEDFEDLKADVLQALEAI*

>Glyma.18g261600.2.p sequence-type=predicted peptide transcript=Glyma.18g261600.2 locus=Glyma.18g261600 ID=Glyma.18g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSSSHMRFTFECRSDPDFSPPPPSFDNLRRRNFRSSAGSGAAFHGISSLILRFPPNFQRQLSTKARRNCSNIGVAQIVAASWSNNSDNSPAAGAPAPPAATAADAATVPLPVDLAAAEDVVVSAAAAENGTVQLNSSSYSFLKSDASKTIHAAERLGRGIETDGITTPVLNTSAYFFKKTADLIDFKENRQVSYEYGRYGNPTTVVLEEKISILEGAESTVIMASGMCASVVLFMALVPAGGHLVTTTDCYRKTRIFIETFLPKMGITTTVIDPADVGALESALEQHNVSLFFTESPTNPFLRCVDIKLVSELCHKKGTLLCIDGTFATPLNQKALALGADLILHSLTKYMGGHHDALGGCISGSTKVVSQIRTLHHVLGGTLNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAELLEAHPKVSWHFDMHTVMPRLHAI*






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