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Report for Sequence Feature Glyma.18g260900

Feature Type:gene_model
Chromosome:Gm18
Start:54674591
stop:54677015
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g260900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69530.1AT expansin A1 JGI N/AIEA
GO:0009664GO-bp plant-type cell wall organization EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
PF01357PFAM Pollen allergen JGI N/AIEA
PF03330PFAM Rare lipoprotein A (RlpA)-like double-psi beta-barrel JGI N/AIEA

Expression Patterns of Glyma.18g260900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g260900
ParalogEvidenceComments
Glyma.09g236200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g260900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g49570 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g260900
>Glyma.18g260900.2 sequence-type=transcript locus=Glyma.18g260900 ID=Glyma.18g260900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCACTTTATATATAGATTACTAGTACTAATTAACTGCTCTAGTTCTTCagctagctatagctagctagctaATAAGAATTTATTGCATAATCCACACATTGCTGAATTTTTCATACTCCCATGTTATTTGCATTTATGTAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGATCTCACATGTCAAGGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACCTTCTATGGAGGGGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTAAGCTGTGGTGCATGCTTTCAAATTAAATGTGCGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCACTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTAACCAATGTTGGAGGGGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGTCAGAGTCTTTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCCCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAACTAACCCTTAATTATCTTTTCAATAATGTTTTAGTAATATTATATCATCTCAAGATTACAAATCAAAGAACCAAGCTATATATAGTTGAGTATTGTAGATGGATTAGTGTTGTGGGCTAGATAGAAGATGATTTAGCCCCCttttatttatatataaatatatttaatttgatttatatgtaGCAAGCATTTGCATATGATGTGCTGGCTTAATTTATGCTATGCCTCAGCAAATGGGATACTTGCTCTGTACGTTGAGAAAGATAAATTGTAGAAAAGATTGTTGAACCGTTGAATGTAAGCTCTTGTACTTTAGTTATTGATGAATGAATGAGTGAGAAAGGTGATGCTTCAATTGAGTAATAAAAAAGTTGACCCTGACTTCACTTGCATTCCTAAAAGTGCAGTGGACAAAATGAGTGATTCAGATAGTTCCTCTGATCTCTCGTGAACCTAATGTAATTCTTTAGGTTAAGTTTAATTGAGCAAGTAAAGAAAAAAAATATATTGTTCAATGTTCATCATTACCCCTTTCTCTTGCATGTATAAAGCCATTCTGGCAGCTTTTGTACTtttctttcttttcatttgtctttcttgctttTTGGCAATCTGGTCACATTCTTGAAAATTATTATAAACAATGTTTCGTAGTTAAAAGAAATTTAAATCAGAA
Coding sequences of Glyma.18g260900
>Glyma.18g260900.1 sequence-type=CDS polypeptide=Glyma.18g260900.1.p locus=Glyma.18g260900 ID=Glyma.18g260900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGACTCACATCTATTTATTCCTTCCCAATTTCCTCCTCCATTTCCACAAACAACTTCTTTCAAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGATCTCACATGTCAAGGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACCTTCTATGGAGGGGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTAAGCTGTGGTGCATGCTTTCAAATTAAATGTGCGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCACTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTAACCAATGTTGGAGGGGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGTCAGAGTCTTTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCCCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAA

>Glyma.18g260900.2 sequence-type=CDS polypeptide=Glyma.18g260900.2.p locus=Glyma.18g260900 ID=Glyma.18g260900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGATCTCACATGTCAAGGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACCTTCTATGGAGGGGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTAAGCTGTGGTGCATGCTTTCAAATTAAATGTGCGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCACTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTAACCAATGTTGGAGGGGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGTCAGAGTCTTTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCCCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAA
Predicted protein sequences of Glyma.18g260900
>Glyma.18g260900.1.p sequence-type=predicted peptide transcript=Glyma.18g260900.1 locus=Glyma.18g260900 ID=Glyma.18g260900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLTHIYLFLPNFLLHFHKQLLSRKMALLGFLLGLFYMISHVKGYGFGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFQIKCANDPQWCLPGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY*

>Glyma.18g260900.2.p sequence-type=predicted peptide transcript=Glyma.18g260900.2 locus=Glyma.18g260900 ID=Glyma.18g260900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALLGFLLGLFYMISHVKGYGFGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFQIKCANDPQWCLPGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY*






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