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Report for Sequence Feature Glyma.18g260200

Feature Type:gene_model
Chromosome:Gm18
Start:54624746
stop:54630334
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g260200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28970.1AT Domain of unknown function (DUF298) JGI N/AIEA
GO:0045116GO-bp protein neddylation EnsemblGenomesN/AIEA
GO:0051443GO-bp positive regulation of ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0000151GO-cc ubiquitin ligase complex EnsemblGenomesN/AIEA
GO:0031624GO-mf ubiquitin conjugating enzyme binding EnsemblGenomesN/AIEA
GO:0032182GO-mf ubiquitin-like protein binding EnsemblGenomesN/AIEA
GO:0097602GO-mf cullin family protein binding EnsemblGenomesN/AIEA
PTHR12281Panther RP42 RELATED JGI N/AIEA
PF03556PFAM Cullin binding JGI N/AIEA

Expression Patterns of Glyma.18g260200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g260200
ParalogEvidenceComments
Glyma.09g237300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g260200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g49490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g260200
>Glyma.18g260200.2 sequence-type=transcript locus=Glyma.18g260200 ID=Glyma.18g260200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACGCTTCTCCTATCCGAGTTTCTCCCTCTCCTCTGCTTGCTCGAAGAGCTTTGGAGGGCAAAGTTTCGCCATGGATGCATCTGGGATCGACATCTTTGAGATTTACCGAAGATACTGTGACATAAAATCAGGACATGCATATATTGGTGGGGAAGAAGGGTACAGGCAAGACAGTGACCTTCAAAAGGCTAAGGTTTCAAGGGAGGCACTCACACAGCTCTCCAAATTGGTTGAGTCTCGTGTTACTACAGGGGTAACAATTTTTGATGAACTTTCAATGCTCATGTCACGGTTGAATTTGAGGGCGGACTTTTCAGAATTCTCGAGGTTCTATGATTTTGTTTTCTTCATGTGTCGCGAAAATGGTCAAAAGAATATTACTGTAAGCAGGGCGGTAAATGCATGGAAATTAGTTCTTGCTGGGAGGTTTTCACTGCTTCATCCATGGTGTGACTTTGTTGAGAATCAACGATACAACATCTTTGAGGATACCTGGCAACAGGTTCTAGCTTTCAGTGGGTTTACGCATGATAGTCTGGATGCATATGATCCTGAAGGTGCTTGGCCTGTTTTAATAGATGATTTTGTTGAGCATGTGCACAGGATGCTAGGATCGTATTATGATAATTCCAACTTACATTGTAACTGTGATGATCCAGAATCTCAGTCATGGGTTTTTGATGACCCCCTTCCTGGACTGACCATTTTTTCTGGTCTAAAGAGGAAGTTACCCGATGACTCGAGCAAAAGTGATGATATGGATTCCAATGACATGATTTTTTCAAACTGTAAAAGAAGTCGAGCTCACGATGCAGAGGATTTGGAGGACAATCCACCAGGGAATACAGCATATGATTGTATGGAAACCAGTAGACAAAATAGTCCATTGTGTTCATCTATGTCCCCATGTGCAGTTGAAGGTTGTCTGTCTAAGGGGTTTGCAGGACTACTCAACTTGTTCCTATGTGTAGTTTGGTAGGGAGAGAAGGGCTTCCTTTTGATGAAGCTCCCCTCTTATAGTTAAAGAAATACATAGAAGGTTCTTTTGCTAGTTGATATCTGTTGATGTATTCATTTTGAATGGGCTACAATTACATGATGCTAGTTTCTCATTAATATTATTCGTGGCGTTGTAATTTTTAACATCATCCTGGTGAGTGTTAAATAACTATCCATTGCCTTTGATAAAATCAATAGAAATGTTGTGTTTTGCTTCTATGGG
Coding sequences of Glyma.18g260200
>Glyma.18g260200.1 sequence-type=CDS polypeptide=Glyma.18g260200.1.p locus=Glyma.18g260200 ID=Glyma.18g260200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGCATCTGGGATCGACATCTTTGAGATTTACCGAAGATACTGTGACATAAAATCAGGACATGCATATATTGGTGGGGAAGAAGGGTACAGGCAAGACAGTGACCTTCAAAAGGCTAAGGTTTCAAGGGAGGCACTCACACAGCTCTCCAAATTGGTTGAGTCTCGTGTTACTACAGGGGTAACAATTTTTGATGAACTTTCAATGCTCATGTCACGGTTGAATTTGAGGGCGGACTTTTCAGAATTCTCGAGGTTCTATGATTTTGTTTTCTTCATGTGTCGCGAAAATGGTCAAAAGAATATTACTGTAAGCAGGGCGGTAAATGCATGGAAATTAGTTCTTGCTGGGAGGTTTTCACTGCTTCATCCATGGTGTGACTTTGTTGAGAAGAATCAACGATACAACATCTTTGAGGATACCTGGCAACAGGTTCTAGCTTTCAGTGGGTTTACGCATGATAGTCTGGATGCATATGATCCTGAAGGTGCTTGGCCTGTTTTAATAGATGATTTTGTTGAGCATGTGCACAGGATGCTAGGATCGTATTATGATAATTCCAACTTACATTGTAACTGTGATGATCCAGAATCTCAGTCATGGGTTTTTGATGACCCCCTTCCTGGACTGACCATTTTTTCTGGTCTAAAGAGGAAGTTACCCGATGACTCGAGCAAAAGTGATGATATGGATTCCAATGACATGATTTTTTCAAACTGTAAAAGAAGTCGAGCTCACGATGCAGAGGATTTGGAGGACAATCCACCAGGGAATACAGCATATGATTGTATGGAAACCAGTAGACAAAATAGTCCATTGTGTTCATCTATGTCCCCATGTGCAGTTGAAGGTTGTCTGTCTAAGGGGTTTGCAGGACTACTCAACTTGTTCCTATGTGTAGTTTGGTAG

>Glyma.18g260200.2 sequence-type=CDS polypeptide=Glyma.18g260200.2.p locus=Glyma.18g260200 ID=Glyma.18g260200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGCATCTGGGATCGACATCTTTGAGATTTACCGAAGATACTGTGACATAAAATCAGGACATGCATATATTGGTGGGGAAGAAGGGTACAGGCAAGACAGTGACCTTCAAAAGGCTAAGGTTTCAAGGGAGGCACTCACACAGCTCTCCAAATTGGTTGAGTCTCGTGTTACTACAGGGGTAACAATTTTTGATGAACTTTCAATGCTCATGTCACGGTTGAATTTGAGGGCGGACTTTTCAGAATTCTCGAGGTTCTATGATTTTGTTTTCTTCATGTGTCGCGAAAATGGTCAAAAGAATATTACTGTAAGCAGGGCGGTAAATGCATGGAAATTAGTTCTTGCTGGGAGGTTTTCACTGCTTCATCCATGGTGTGACTTTGTTGAGAATCAACGATACAACATCTTTGAGGATACCTGGCAACAGGTTCTAGCTTTCAGTGGGTTTACGCATGATAGTCTGGATGCATATGATCCTGAAGGTGCTTGGCCTGTTTTAATAGATGATTTTGTTGAGCATGTGCACAGGATGCTAGGATCGTATTATGATAATTCCAACTTACATTGTAACTGTGATGATCCAGAATCTCAGTCATGGGTTTTTGATGACCCCCTTCCTGGACTGACCATTTTTTCTGGTCTAAAGAGGAAGTTACCCGATGACTCGAGCAAAAGTGATGATATGGATTCCAATGACATGATTTTTTCAAACTGTAAAAGAAGTCGAGCTCACGATGCAGAGGATTTGGAGGACAATCCACCAGGGAATACAGCATATGATTGTATGGAAACCAGTAGACAAAATAGTCCATTGTGTTCATCTATGTCCCCATGTGCAGTTGAAGGTTGTCTGTCTAAGGGGTTTGCAGGACTACTCAACTTGTTCCTATGTGTAGTTTGGTAG
Predicted protein sequences of Glyma.18g260200
>Glyma.18g260200.1.p sequence-type=predicted peptide transcript=Glyma.18g260200.1 locus=Glyma.18g260200 ID=Glyma.18g260200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDASGIDIFEIYRRYCDIKSGHAYIGGEEGYRQDSDLQKAKVSREALTQLSKLVESRVTTGVTIFDELSMLMSRLNLRADFSEFSRFYDFVFFMCRENGQKNITVSRAVNAWKLVLAGRFSLLHPWCDFVEKNQRYNIFEDTWQQVLAFSGFTHDSLDAYDPEGAWPVLIDDFVEHVHRMLGSYYDNSNLHCNCDDPESQSWVFDDPLPGLTIFSGLKRKLPDDSSKSDDMDSNDMIFSNCKRSRAHDAEDLEDNPPGNTAYDCMETSRQNSPLCSSMSPCAVEGCLSKGFAGLLNLFLCVVW*

>Glyma.18g260200.2.p sequence-type=predicted peptide transcript=Glyma.18g260200.2 locus=Glyma.18g260200 ID=Glyma.18g260200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDASGIDIFEIYRRYCDIKSGHAYIGGEEGYRQDSDLQKAKVSREALTQLSKLVESRVTTGVTIFDELSMLMSRLNLRADFSEFSRFYDFVFFMCRENGQKNITVSRAVNAWKLVLAGRFSLLHPWCDFVENQRYNIFEDTWQQVLAFSGFTHDSLDAYDPEGAWPVLIDDFVEHVHRMLGSYYDNSNLHCNCDDPESQSWVFDDPLPGLTIFSGLKRKLPDDSSKSDDMDSNDMIFSNCKRSRAHDAEDLEDNPPGNTAYDCMETSRQNSPLCSSMSPCAVEGCLSKGFAGLLNLFLCVVW*






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