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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G29590.1 | AT | HXXXD-type acyl-transferase family protein | JGI | N/A | IEA |
| GO:0016747 | GO-mf | transferase activity, transferring acyl groups other than amino-acyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016747 | GO-mf | transferase activity, transferring acyl groups other than amino-acyl groups | JGI | N/A | IEA |
| PF02458 | PFAM | Transferase family | JGI | N/A | IEA |
| PWY-2861 | SoyCyc9 | biochanin A conjugates interconversion | Plant Metabolic Network | ISS | |
| GN7V-55367 | SoyCyc9-rxn | isoflavone-7-O-β-glucoside 6"-O-malonyltransferase | Plant Metabolic Network | ISS |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g49240 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g258000.1 sequence-type=CDS polypeptide=Glyma.18g258000.1.p locus=Glyma.18g258000 ID=Glyma.18g258000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGTGGAAAATATCAAAGTCCACGAAGAGTCCAACGTTGCCCCTCCACCATCATCAACACAATCACTATCCCTCCCTTTCACTTTGTATGACACTTTGTTCCTCAGGTTCCCTTCCATTGACTGGATCTTCTTCTATTCCCTCAATGCTCAACAATCAGAACCTTCTTTCTTCTATGCCAATGTGATTCCAAAGCTCAAAGCCTCTCTCTCTCACACCCTCCTACACTACCCTCCTCTCGCTGGCAACATTCTTTGGCCTTCTGATTCCACAATTCCAATCATCAGTTACACCCCTGGTGATGCCGTTTCCGTCGTTGTTGCTGAGTCCAATGCTGAATTCAACCACTTCATAGATTACTCAGTGCCCCATGAAGCAACAGAGTCTCGTTTTTTAGTACCCCACTTGGAATCCTCGGATTCTCGTGCTTCTGCCCTAGCTCTTCAGATCACTCTTTTCCCCAACAAAGGCTTCAGCATTGGCATCAGCATCCACCATGCTGCTGTTGATGGAAGATCTTCCACCATGTTCATCAAGGCTTGGGCTTCTCTGTGCCAACAAATTATTATGAACTATGAAACAACATCACAAAGTGTGGTGGTGCCATCTTTGGTGCCGGAGTTGGAGCCTTCCTTTGACAGAACACTCATCAAAGACCCGGGAAATTGGAACCGCTTCTTGTTAGCAAAATGGTGCCCTAATATTGCTAATGGAAACAGTGATGGTGATGATAATGGGAAGCGAACCGTGAAGATTCTACCTTCCCCACCAAGACTCAAGGAAGCGTTTTCAGCCACGTCAGTGATTAAACCAACAATTGAGGAAGCAGTTAGAGCCACGTTTGTTCTCACACGAGAGGATTTGGAGAAGATAAAGAAAAGGGTCTTCTCCAAGTGGGACCAAGTGAAAGACCCAGAACCAGAACCAGAATCAGAATCAGAATCAAAATCAACGGTTAATTCTTCTTCAAAGCCACCAACTTTATCATCCTTTGTTCTTGCATGTGCATATTCTGTTGTGTGTATTGCAAAAGCGGTTCACGGGGTTGAAAAGGAGAAGCAAAAGTTTGGTTTCTGGTTCCCGGTGGATTATAGGGCTAGGTTAGAGCCTCCAATCCCTGATACCTATTTTGGAAACTGTGTGTGGAGCCACTTGGTGGATGCAGAACCCTTGGACTTCATAAAGGAAGAAGGGCTCGTCCTTGTTGCAAAAAGCATTAACAGAAAAGTGAAGACCTTACACAAGGAAGAAGTTTTCGGTAAATCGTCTTCTCGGTTCATGGCTTTGGCTAAAGAAGGAGCTGAAATGTTGGGAGTGTCGATGTCTAACAAATTTATGGTTTATGAGACTGATTTTGGTTGGGGGAAGCCTGCTAAGGTGGACATTATAAATTTGGATAGGGCTTCGAATTTGACCATGGGGTTGTTGGACAGCAAGGATGGGGATGGAGGTGTTGAAGTGGGGCTCGTTATGCATCAGAAGGTGATGGATCTCTTTGGTACTATTTTTCATGGAGGACTGAAAGATGAGTGA
>Glyma.18g258000.1.p sequence-type=predicted peptide transcript=Glyma.18g258000.1 locus=Glyma.18g258000 ID=Glyma.18g258000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAVENIKVHEESNVAPPPSSTQSLSLPFTLYDTLFLRFPSIDWIFFYSLNAQQSEPSFFYANVIPKLKASLSHTLLHYPPLAGNILWPSDSTIPIISYTPGDAVSVVVAESNAEFNHFIDYSVPHEATESRFLVPHLESSDSRASALALQITLFPNKGFSIGISIHHAAVDGRSSTMFIKAWASLCQQIIMNYETTSQSVVVPSLVPELEPSFDRTLIKDPGNWNRFLLAKWCPNIANGNSDGDDNGKRTVKILPSPPRLKEAFSATSVIKPTIEEAVRATFVLTREDLEKIKKRVFSKWDQVKDPEPEPESESESKSTVNSSSKPPTLSSFVLACAYSVVCIAKAVHGVEKEKQKFGFWFPVDYRARLEPPIPDTYFGNCVWSHLVDAEPLDFIKEEGLVLVAKSINRKVKTLHKEEVFGKSSSRFMALAKEGAEMLGVSMSNKFMVYETDFGWGKPAKVDIINLDRASNLTMGLLDSKDGDGGVEVGLVMHQKVMDLFGTIFHGGLKDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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