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Report for Sequence Feature Glyma.18g256200

Feature Type:gene_model
Chromosome:Gm18
Start:54222005
stop:54226738
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g256200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28715.1AT ATPase, V0/A0 complex, subunit C/D JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0007034GO-bp vacuolar transport EnsemblGenomesN/AIEA
GO:0007035GO-bp vacuolar acidification EnsemblGenomesN/AIEA
GO:0015991GO-bp ATP hydrolysis coupled proton transport EnsemblGenomesN/AIEA
GO:0005765GO-cc lysosomal membrane EnsemblGenomesN/AIEA
GO:0016471GO-cc vacuolar proton-transporting V-type ATPase complex EnsemblGenomesN/AIEA
GO:0033179GO-cc proton-transporting V-type ATPase, V0 domain EnsemblGenomesN/AIEA
GO:0008553GO-mf proton-exporting ATPase activity, phosphorylative mechanism EnsemblGenomesN/AIEA
GO:0015078GO-mf proton transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0046961GO-mf proton-transporting ATPase activity, rotational mechanism EnsemblGenomesN/AIEA
KOG2957 KOG Vacuolar H+-ATPase V0 sector, subunit d JGI N/AIEA
PTHR11028Panther VACUOLAR ATP SYNTHASE SUBUNIT AC39 JGI N/AIEA
PF01992PFAM ATP synthase (C/AC39) subunit JGI N/AIEA

Expression Patterns of Glyma.18g256200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g256200
ParalogEvidenceComments
Glyma.09g240300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g256200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g49110 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g256200
>Glyma.18g256200.1 sequence-type=CDS polypeptide=Glyma.18g256200.1.p locus=Glyma.18g256200 ID=Glyma.18g256200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACGGATTCGAAGCTCTCACCTTCAACATCCATGGCGGCTTCCTCGAGGCCATCGTCCGCGGCCACCGCGCCGGCCTCCTCACCACCGCCGATTACAACAACCTCTGCCAATGCGAAACCCTCGACGACATCAAGATGCACCTCTCCGCCACCGAGTACGGTCCTTACCTCCAAAACGAGCCTTCTCCGTTGCATACCACCACGATTGTCGAGAAGTGTACTCTTAAGCTGGTTGATGATTACAAGAACATGCTATGCCAAGCCACAGAACCGTTGTCAACCTTTTTAGAGTATATCACATATGGTCACATGATAGACAATGTTGTTTTGATTGTTACTGGCACCTTGCATGAGAGAGATGTTCAAGAATTATTAGAAAAGTGCCATCCACTCGGCATGTTTGACAGTATTGCTACTCTGGCTGTTGCTCAGAATATGCGGGAGCTTTACAGGCTGGTTCTTGTTGACACTCCTCTGGCTCCATACTTCTCTGAGTGCATTACATCAGAGGACTTGGATGATATGAACATTGAAATAATGAGGAACACTCTTTACAAGGCATACCTTGAAGACTTCTACAGATTTTGTCAGAAACTTGGTGGTGCCACAGCTGAGATAATGTCTGACCTTCTAGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGCATTGGTACTGAGCTTACCAGAGATGACCGTAGAAAATTATACTCTAATTTTGGTTTGCTATACCCATATGGTCATGAGGAACTTGCTGTCTGTGAGGACATTGATCAGGTTCGTGCTGTCATGGAAAAATATCCCCCCTATCAATCTATTTTTGCTAAGCTATCATATGGAGAGAGCCAGATGCTTGACAAGGCATTCTATGAGGAGGAGGTGAAAAGGCTTTGCTTGGCATTTGAGCAACAGTTTCATTATGCTGTGTTCTTCGCATATATGAGGTTAAGGGAACAGGAGATCAGGAACTTAATGTGGATTTCAGAATGTGTTGCTCAGAATCAGAAGTCCAGAGTTCATGACAGTGTTGTCTTCATATTTTAG
Predicted protein sequences of Glyma.18g256200
>Glyma.18g256200.1.p sequence-type=predicted peptide transcript=Glyma.18g256200.1 locus=Glyma.18g256200 ID=Glyma.18g256200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYGFEALTFNIHGGFLEAIVRGHRAGLLTTADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKNMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF*






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