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Report for Sequence Feature Glyma.18g255800

Feature Type:gene_model
Chromosome:Gm18
Start:54197482
stop:54200732
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g255800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73590.1AT Auxin efflux carrier family protein JGI N/AIEA
AT2G01420.2AT Auxin efflux carrier family protein JGI N/AIEA
GO:0009734GO-bp auxin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0009926GO-bp auxin polar transport EnsemblGenomesN/AIEA
GO:0010252GO-bp auxin homeostasis EnsemblGenomesN/AIEA
GO:0010315GO-bp auxin efflux EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0010329GO-mf auxin efflux transmembrane transporter activity EnsemblGenomesN/AIEA
PF03547PFAM Membrane transport protein JGI N/AIEA

Proteins Associated with Glyma.18g255800
LocusGene SymbolProtein Name
PIN8d PIN-formed 8 gene d

Expression Patterns of Glyma.18g255800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g255800
ParalogEvidenceComments
Glyma.09g240500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g255800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g49080 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g255800
>Glyma.18g255800.2 sequence-type=transcript locus=Glyma.18g255800 ID=Glyma.18g255800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTCATTCAATATTCAAGGACAAAATAGCCTAAAAAGCATGTAATAGAGCTTAATAAGGTGTAGGTGACCCTAAATCCTTCCAACACTAGCCATCATGATTTCCTTAGCCGATGCCTATCATGTAGTGGCAGCCACTGTCCCATTATATGTGACCTTGATACTGGCCTACATTTCTGTGAAATGGTGGAAGATCTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAGTTCTCTATCCCACTTTTGTCTTTTCAAGTCATTTCCTCCAACAACATCTACAAAATGAGCCTCAAACTCATGTATGCCGACTTTCTCCAGAAATTGCTTGCATTTCTTCTCTTAATAGCAATCACTAAGATCAGTGGCCGAGGAGGTTTGAAGTGGATCATAACCGGTTTGTCATTAACAACACTTCCTAACACTTTGATCCTTGGAATCCCTCTCATGAAGGCTATGTATAAGGGTGAAGCAGTTGTTCTCCTTGCACAGATTATTTTCTTGCAGAGCATGATTTGGTACAATTTGCTGTTGTTCCTTTATGAACTTGATGCCGTCAACAAGACCAGGCCTACTGCAGCCGCACCACCATCACAAGGATCTGGAGAAACAGACACAGCTCGTGAAGTACAATCaaaaagagaagaagacgcagaacctagaataaaaaggaagatgaagGTCATGCTCATTCTTGTCACAGTGGGAAAGAAGCTAATCAGAAATCCTAATACATATGCAACTTTATTGGGTTTTATTTGGTCAAGCATACAATTCAGGTGGGGATTACATATGCCTGAAGTTGTTAATCAGTCAATAGAAATATTGTCCAATGGAGGTCTTGGCATGGCAATGTTCAGCCTAGGTCTGTTTATGGCATCACAGTCAAGCATCATAGCATGTGGGCCAAGGATGACAATGGTGGCAATAGGACTGAAAGTTGTGCTTGGACCTGCTCTGATGGCTGTGGCATCCCTTGTGATTGGATTAAGAGACAAACTGTTTAAAGTGGCAATTGTTCAGCTCTACCCCAAGGAATTGTTCCTTTTGTTTTTGCCAAGGAGTATAATGTCCATCCAGCCGTTTTAAGCACTGCGATCTTGTTAGGAATGCTCATTGCCTTGCCGGTGGAATTGGCCTTCTACTTCCTATTAGCAATTTGAAGAGCAATGTTAAATATATGCTGAGGACATCGAGAATAGCAGCATTACATTGCTGTAAAATACCAATTTATAAATAGTTGTAAATTTACTGCACTATTGATTCATTGTAATTAGAAAACATGTGATCACTCAACTAATAAATACTACTTAGTTTGC
Coding sequences of Glyma.18g255800
>Glyma.18g255800.1 sequence-type=CDS polypeptide=Glyma.18g255800.1.p locus=Glyma.18g255800 ID=Glyma.18g255800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTTCCTTAGCCGATGCCTATCATGTAGTGGCAGCCACTGTCCCATTATATGTGACCTTGATACTGGCCTACATTTCTGTGAAATGGTGGAAGATCTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAGTTCTCTATCCCACTTTTGTCTTTTCAAGTCATTTCCTCCAACAACATCTACAAAATGAGCCTCAAACTCATGTATGCCGACTTTCTCCAGAAATTGCTTGCATTTCTTCTCTTAATAGCAATCACTAAGATCAGTGGCCGAGGAGGTTTGAAGTGGATCATAACCGGTTTGTCATTAACAACACTTCCTAACACTTTGATCCTTGGAATCCCTCTCATGAAGGCTATGTATAAGGGTGAAGCAGTTGTTCTCCTTGCACAGATTATTTTCTTGCAGAGCATGATTTGGTACAATTTGCTGTTGTTCCTTTATGAACTTGATGCCGTCAACAAGACCAGGCCTACTGCAGCCGCACCACCATCACAAGGATCTGGAGAAACAGACACAGCTCGTGAAGTACAATCAAAAAGAGAAGAAGACGCAGAACCTAGAATAAAAAGGAAGATGAAGGTCATGCTCATTCTTGTCACAGTGGGAAAGAAGCTAATCAGAAATCCTAATACATATGCAACTTTATTGGGTTTTATTTGGTCAAGCATACAATTCAGGTGGGGATTACATATGCCTGAAGTTGTTAATCAGTCAATAGAAATATTGTCCAATGGAGGTCTTGGCATGGCAATGTTCAGCCTAGGTCTGTTTATGGCATCACAGTCAAGCATCATAGCATGTGGGCCAAGGATGACAATGGTGGCAATAGGACTGAAAGTTGTGCTTGGACCTGCTCTGATGGCTGTGGCATCCCTTGTGATTGGATTAAGAGACAAACTGTTTAAAGTGGCAATTGTTCAGGCAGCTCTACCCCAAGGAATTGTTCCTTTTGTTTTTGCCAAGGAGTATAATGTCCATCCAGCCGTTTTAAGCACTGCGATCTTGTTAGGAATGCTCATTGCCTTGCCGGTGGAATTGGCCTTCTACTTCCTATTAGCAATTTGA

>Glyma.18g255800.2 sequence-type=CDS polypeptide=Glyma.18g255800.2.p locus=Glyma.18g255800 ID=Glyma.18g255800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTTCCTTAGCCGATGCCTATCATGTAGTGGCAGCCACTGTCCCATTATATGTGACCTTGATACTGGCCTACATTTCTGTGAAATGGTGGAAGATCTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAGTTCTCTATCCCACTTTTGTCTTTTCAAGTCATTTCCTCCAACAACATCTACAAAATGAGCCTCAAACTCATGTATGCCGACTTTCTCCAGAAATTGCTTGCATTTCTTCTCTTAATAGCAATCACTAAGATCAGTGGCCGAGGAGGTTTGAAGTGGATCATAACCGGTTTGTCATTAACAACACTTCCTAACACTTTGATCCTTGGAATCCCTCTCATGAAGGCTATGTATAAGGGTGAAGCAGTTGTTCTCCTTGCACAGATTATTTTCTTGCAGAGCATGATTTGGTACAATTTGCTGTTGTTCCTTTATGAACTTGATGCCGTCAACAAGACCAGGCCTACTGCAGCCGCACCACCATCACAAGGATCTGGAGAAACAGACACAGCTCGTGAAGTACAATCAAAAAGAGAAGAAGACGCAGAACCTAGAATAAAAAGGAAGATGAAGGTCATGCTCATTCTTGTCACAGTGGGAAAGAAGCTAATCAGAAATCCTAATACATATGCAACTTTATTGGGTTTTATTTGGTCAAGCATACAATTCAGGTGGGGATTACATATGCCTGAAGTTGTTAATCAGTCAATAGAAATATTGTCCAATGGAGGTCTTGGCATGGCAATGTTCAGCCTAGGTCTGTTTATGGCATCACAGTCAAGCATCATAGCATGTGGGCCAAGGATGACAATGGTGGCAATAGGACTGAAAGTTGTGCTTGGACCTGCTCTGATGGCTGTGGCATCCCTTGTGATTGGATTAAGAGACAAACTGTTTAAAGTGGCAATTGTTCAGCTCTACCCCAAGGAATTGTTCCTTTTGTTTTTGCCAAGGAGTATAATGTCCATCCAGCCGTTTTAA
Predicted protein sequences of Glyma.18g255800
>Glyma.18g255800.1.p sequence-type=predicted peptide transcript=Glyma.18g255800.1 locus=Glyma.18g255800 ID=Glyma.18g255800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MISLADAYHVVAATVPLYVTLILAYISVKWWKIFTPDQCSGINKFVAKFSIPLLSFQVISSNNIYKMSLKLMYADFLQKLLAFLLLIAITKISGRGGLKWIITGLSLTTLPNTLILGIPLMKAMYKGEAVVLLAQIIFLQSMIWYNLLLFLYELDAVNKTRPTAAAPPSQGSGETDTAREVQSKREEDAEPRIKRKMKVMLILVTVGKKLIRNPNTYATLLGFIWSSIQFRWGLHMPEVVNQSIEILSNGGLGMAMFSLGLFMASQSSIIACGPRMTMVAIGLKVVLGPALMAVASLVIGLRDKLFKVAIVQAALPQGIVPFVFAKEYNVHPAVLSTAILLGMLIALPVELAFYFLLAI*

>Glyma.18g255800.2.p sequence-type=predicted peptide transcript=Glyma.18g255800.2 locus=Glyma.18g255800 ID=Glyma.18g255800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MISLADAYHVVAATVPLYVTLILAYISVKWWKIFTPDQCSGINKFVAKFSIPLLSFQVISSNNIYKMSLKLMYADFLQKLLAFLLLIAITKISGRGGLKWIITGLSLTTLPNTLILGIPLMKAMYKGEAVVLLAQIIFLQSMIWYNLLLFLYELDAVNKTRPTAAAPPSQGSGETDTAREVQSKREEDAEPRIKRKMKVMLILVTVGKKLIRNPNTYATLLGFIWSSIQFRWGLHMPEVVNQSIEILSNGGLGMAMFSLGLFMASQSSIIACGPRMTMVAIGLKVVLGPALMAVASLVIGLRDKLFKVAIVQLYPKELFLLFLPRSIMSIQPF*






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