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Report for Sequence Feature Glyma.18g253900

Feature Type:gene_model
Chromosome:Gm18
Start:54032071
stop:54037858
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g253900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61330.1AT rRNA processing protein-related JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
KOG2773 KOG Apoptosis antagonizing transcription factor/protein transport protein JGI N/AIEA
PTHR15565Panther AATF PROTEIN (APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR) JGI N/AIEA
PF08164PFAM Apoptosis-antagonizing transcription factor, C-terminal JGI N/AIEA

Expression Patterns of Glyma.18g253900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g253900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g48890 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g253900
>Glyma.18g253900.2 sequence-type=transcript locus=Glyma.18g253900 ID=Glyma.18g253900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAGCAGCCTGGCTTCCCTAGGGTTTTCTTCTCACTTTACGACCACTGCAGCGCCATCGCTTTTCGCGGCACCGCGACCCGCGCCACCTCTTCAGTCTTCATTCTTCTCACTTCACGAATCACGACCGAACCGTGAAAAACGTTCCCAGCCTCCCACCGTGCCACCTCTTCAGGTGTAAAAATGGGGTTATCTGCCAAGAAATCTAGAAAAAGAGGAAAAAGGGACAGTGATTCAGATGAATACGATAATATGGAGTATGAAGAGGTGgaggatgattacgatgatgatggtgaggaggaggatgaagaggaagaacatggagaggaagtaacagatgatgaagatgGGACAGGAGAGCATGGTGAATGGAAGAATGATGAGATGGAACAGCTTGAGAAAGAATATAGAGATCTTCATCACCAGGAGCTAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATCTTCTTAAGGGTCAAGCTGTGAAAAGCCAGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGATTCTTGCTTCAGAAGCCTTTCTCAAGCTCCAATAGGTTACCACAGGAATCAATCAAGTCTTTGTTCTGTGAAACTGATGAGACAGTTAGAGTAGCATATTCAGATCTGATGACTTCATCCAAAGAGACTTTAGATTCTATATTGGAACTGCAAGAGGCTCTCTTTGCTAAGAATCCATCAATTACCCAAGCCATAGTTGGTTCAGAAGGTTCATCAAAAGATTTAGAAGTTTATAAGCATTTGGATGGCAATCTTGATCAGGAGTGGTCACAGATTTCACAGATGCACAAGAGTATAACATCTTTCAGAGACAAGTCAATCAACAAATGGCAGCGGGTGACACAAGTGACTACTGGTGCTGCTGCCATTAAGGGCAAATTGCATGCTTTTAATCAGGATATTAGCAATCAAGTCGCTGCTTATATGAGAGATCCCAGTAGACTAATCAAGCAGATGCGGGTGAGAAGATCAGATGTTAATATATTTTTATCTGTTCCAGAGGTTGTTGGTGAACCTAAAGAAGCGGAAACATGTACTGATGGTGATCCTGAACTTCTGGATGACTCTGAATTTTATCAACAATTATTGAAAGAATTTTTTGAGACAGTTGATCCTTCATCATCTGGTTTTGCACTTGTACTGTAGGGATCTCTATTAGCATTTCCCTGGGATATATAAAATATGAATGATTCATAATGCTTGCTGCTTCTGAAAACTGTGCCATTTATGCCAAGCTTGTGAGAATAGTAAAAAAAAAAGCACGAAGGTTCCCCTAAACAGCCAGTTGTAAATTTTCAGAGGCTGAAATTTACAGAAAGCATTTTATGCTTTGAAGAGAATGCAACCAAAGAAAAGAAAAATTGTTGATCGTCGCGCCTCAAAAAGTCGGAAGATAAGGTATAATGTTCACGAAAAGATAGTAAATTTTATGGCCCCACTACCTGCCAATGTTCCTCCCATGGCTCCGAAGTTGTTTGAGAATCTGTTTGGATTGAAGACACAAAGATCATCTGCTGCAGCCTCATAATCATGTTGGCAGACAGAAATATTGGTCTCACAGTTTTGCCCTTACTCTTCATATGTTGTACACTAATTTGATTTCTACATGATGCTGATTATTGAGGAATTTGATATTTTTTCCTCATGAGACAATTTTGCTGTAAATCTATTCAGATGCCAATATAATAGATTATAGTTCTGAATTTGCTTCAACATTTCAGTTTTGAAATGCATGTTTGCTACCATATTTTGTTTTATAAAACCA
Coding sequences of Glyma.18g253900
>Glyma.18g253900.1 sequence-type=CDS polypeptide=Glyma.18g253900.1.p locus=Glyma.18g253900 ID=Glyma.18g253900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTATCTGCCAAGAAATCTAGAAAAAGAGGAAAAAGGGACAGTGATTCAGATGAATACGATAATATGGAGTATGAAGAGGTGGAGGATGATTACGATGATGATGGTGAGGAGGAGGATGAAGAGGAAGAACATGGAGAGGAAGTAACAGATGATGAAGATGGGACAGGAGAGCATGGTGAATGGAAGAATGATGAGATGGAACAGCTTGAGAAAGAATATAGAGATCTTCATCACCAGGAGCTAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATCTTCTTAAGGGTCAAGCTGTGAAAAGCCAGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGATTCTTGCTTCAGAAGCCTTTCTCAAGCTCCAATAGGTTACCACAGGAATCAATCAAGTCTTTGTTCTGTGAAACTGATGAGACAGTTAGAGTAGCATATTCAGATCTGATGACTTCATCCAAAGAGACTTTAGATTCTATATTGGAACTGCAAGAGGCTCTCTTTGCTAAGAATCCATCAATTACCCAAGCCATAGTTGGTTCAGAAGGTTCATCAAAAGATTTAGAAGTTTATAAGCATTTGGATGGCAATCTTGATCAGGAGTGGTCACAGATTTCACAGATGCACAAGAGTATAACATCTTTCAGAGACAAGTCAATCAACAAATGGCAGCGGGTGACACAAGTGACTACTGGTGCTGCTGCCATTAAGGGCAAATTGCATGCTTTTAATCAGGATATTAGCAATCAAGTCGCTGCTTATATGAGAGATCCCAGTAGACTAATCAAGCAGATGCGGGTGAGAAGATCAGATGTTAATATATTTTTATCTGTTCCAGAGGTTGTTGGTGAACCTAAAGAAGCGGAAACATGTACTGATGGTGATCCTGAACTTCTGGATGACTCTGAATTTTATCAACAATTATTGAAAGAATTTTTTGAGACAGTTGATCCTTCATCATCTGAGAAAGCATTTTATGCTTTGAAGAGAATGCAACCAAAGAAAAGAAAAATTGTTGATCGTCGCGCCTCAAAAAGTCGGAAGATAAGGTATAATGTTCACGAAAAGATAGTAAATTTTATGGCCCCACTACCTGCCAATGTTCCTCCCATGGCTCCGAAGTTGTTTGAGAATCTGTTTGGATTGAAGACACAAAGATCATCTGCTGCAGCCTCATAA

>Glyma.18g253900.2 sequence-type=CDS polypeptide=Glyma.18g253900.2.p locus=Glyma.18g253900 ID=Glyma.18g253900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTATCTGCCAAGAAATCTAGAAAAAGAGGAAAAAGGGACAGTGATTCAGATGAATACGATAATATGGAGTATGAAGAGGTGGAGGATGATTACGATGATGATGGTGAGGAGGAGGATGAAGAGGAAGAACATGGAGAGGAAGTAACAGATGATGAAGATGGGACAGGAGAGCATGGTGAATGGAAGAATGATGAGATGGAACAGCTTGAGAAAGAATATAGAGATCTTCATCACCAGGAGCTAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATCTTCTTAAGGGTCAAGCTGTGAAAAGCCAGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGATTCTTGCTTCAGAAGCCTTTCTCAAGCTCCAATAGGTTACCACAGGAATCAATCAAGTCTTTGTTCTGTGAAACTGATGAGACAGTTAGAGTAGCATATTCAGATCTGATGACTTCATCCAAAGAGACTTTAGATTCTATATTGGAACTGCAAGAGGCTCTCTTTGCTAAGAATCCATCAATTACCCAAGCCATAGTTGGTTCAGAAGGTTCATCAAAAGATTTAGAAGTTTATAAGCATTTGGATGGCAATCTTGATCAGGAGTGGTCACAGATTTCACAGATGCACAAGAGTATAACATCTTTCAGAGACAAGTCAATCAACAAATGGCAGCGGGTGACACAAGTGACTACTGGTGCTGCTGCCATTAAGGGCAAATTGCATGCTTTTAATCAGGATATTAGCAATCAAGTCGCTGCTTATATGAGAGATCCCAGTAGACTAATCAAGCAGATGCGGGTGAGAAGATCAGATGTTAATATATTTTTATCTGTTCCAGAGGTTGTTGGTGAACCTAAAGAAGCGGAAACATGTACTGATGGTGATCCTGAACTTCTGGATGACTCTGAATTTTATCAACAATTATTGAAAGAATTTTTTGAGACAGTTGATCCTTCATCATCTGGTTTTGCACTTGTACTGTAG
Predicted protein sequences of Glyma.18g253900
>Glyma.18g253900.1.p sequence-type=predicted peptide transcript=Glyma.18g253900.1 locus=Glyma.18g253900 ID=Glyma.18g253900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSAKKSRKRGKRDSDSDEYDNMEYEEVEDDYDDDGEEEDEEEEHGEEVTDDEDGTGEHGEWKNDEMEQLEKEYRDLHHQELDTLKNLKHHKDEDLLKGQAVKSQKALWYKILELRFLLQKPFSSSNRLPQESIKSLFCETDETVRVAYSDLMTSSKETLDSILELQEALFAKNPSITQAIVGSEGSSKDLEVYKHLDGNLDQEWSQISQMHKSITSFRDKSINKWQRVTQVTTGAAAIKGKLHAFNQDISNQVAAYMRDPSRLIKQMRVRRSDVNIFLSVPEVVGEPKEAETCTDGDPELLDDSEFYQQLLKEFFETVDPSSSEKAFYALKRMQPKKRKIVDRRASKSRKIRYNVHEKIVNFMAPLPANVPPMAPKLFENLFGLKTQRSSAAAS*

>Glyma.18g253900.2.p sequence-type=predicted peptide transcript=Glyma.18g253900.2 locus=Glyma.18g253900 ID=Glyma.18g253900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSAKKSRKRGKRDSDSDEYDNMEYEEVEDDYDDDGEEEDEEEEHGEEVTDDEDGTGEHGEWKNDEMEQLEKEYRDLHHQELDTLKNLKHHKDEDLLKGQAVKSQKALWYKILELRFLLQKPFSSSNRLPQESIKSLFCETDETVRVAYSDLMTSSKETLDSILELQEALFAKNPSITQAIVGSEGSSKDLEVYKHLDGNLDQEWSQISQMHKSITSFRDKSINKWQRVTQVTTGAAAIKGKLHAFNQDISNQVAAYMRDPSRLIKQMRVRRSDVNIFLSVPEVVGEPKEAETCTDGDPELLDDSEFYQQLLKEFFETVDPSSSGFALVL*






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