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Report for Sequence Feature Glyma.18g252100

Feature Type:gene_model
Chromosome:Gm18
Start:53885762
stop:53894767
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g252100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02090.1AT Proteasome component (PCI) domain protein JGI N/AIEA
GO:0000338GO-bp protein deneddylation EnsemblGenomesN/AIEA
GO:0008180GO-cc COP9 signalosome EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG3250 KOG COP9 signalosome, subunit CSN7 JGI N/AIEA
PTHR15350Panther COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 JGI N/AIEA
PTHR15350:SF5Panther COP9 SIGNALOSOME COMPLEX SUBUNIT 7 JGI N/AIEA
PF01399PFAM PCI domain JGI N/AIEA

Expression Patterns of Glyma.18g252100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g252100 not represented in the dataset
Glyma.18g252100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g252100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g48710 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g252100
>Glyma.18g252100.2 sequence-type=transcript locus=Glyma.18g252100 ID=Glyma.18g252100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGAAGTTACACATTGTAAACAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGATGGATTATGAAGATTTTGGCCGACTGAAGAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGAACTCCTGTCACACCACAATGAAAGATAAAAACAAGGGAAAAGAGGAGAAAACATGTTATTTCTTCAGGGTTGTACTTTGGAAATTGATGGTAATTGTTGAACCAATGTTAGTCATACATATTGAGTTGGCAAGAACAAGCTAAGATGGTAGTGTGTGATCTTTTCTTTTTTTGTTGGAAAATGATATGCTGTTTTTCAAATGGTAAAGTAATTTTAGCTGTTGATAAGAACAATTAATGATTAGTATTATGTGCACATGCATAATAAATCATGTACATGTTAGAATATTAATTGTTAATTTTCTAATTA

>Glyma.18g252100.3 sequence-type=transcript locus=Glyma.18g252100 ID=Glyma.18g252100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGAACTCCTGTCACACCACAATGAAAGATAAAAACAAGGGAAAAGAGGAGAAAACATGTTATTTCTTCAGGGTTGTACTTTGGAAATTGATGGTAATTGTTGAACCAATGTTAGTCATACATATTGAGTTGGCAAGAACAAGCTAAGATGGTAGTGTGTGATCTTTTCTTTTTTTGTTGGAAAATGATATGCTGTTTTTCAAATGGTAAAGTAATTTTAGCTGTTGATAAGAACAATTAATGATTAGTATTATGTGCACATGCATAATAAATCATGTACATGTTAGAATATTAATTGTTAATTTTCTAATTA

>Glyma.18g252100.4 sequence-type=transcript locus=Glyma.18g252100 ID=Glyma.18g252100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGGAATAGTAAGAGGAAAGTTGGATCATCTGCGGCAATGCTTTCAGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGAAGTTACACATTGTAAACAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGATGGATTATGAAGATTTTGGCCGACTGAAGAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGAACTCCTGTCACACCACAATGAAAGATAAAAACAAGGGAAAAGAGGAGAAAACATGTTATTTCTTCAGGGTTGTACTTTGGAAATTGATGGTAATTGTTGAACCAATGTTAGTCATACATATTGAGTTGGCAAGAACAAGCTAAGATGGTAGTGTGTGATCTTTTCTTTTTTTGTTGGAAAATGATATGCTGTTTTTCAAATGGTAAAGTAATTTTAGCTGTTGATAAGAACAATTAATGATTAGTATTATGTGCACATGCATAATAAATCATGTACATGTTAGAATATTAATTGTTAATTTTCTAATTA
Coding sequences of Glyma.18g252100
>Glyma.18g252100.1 sequence-type=CDS polypeptide=Glyma.18g252100.1.p locus=Glyma.18g252100 ID=Glyma.18g252100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGGAATAGTAAGAGGAAAGTTGGATCATCTGCGGCAATGCTTTCAGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGATGGATTATGAAGATTTTGGCCGACTGAAGAGGAGGCGGAAAATACTATTTTGA

>Glyma.18g252100.2 sequence-type=CDS polypeptide=Glyma.18g252100.2.p locus=Glyma.18g252100 ID=Glyma.18g252100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGAAGTTACACATTGTAAACAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGA

>Glyma.18g252100.3 sequence-type=CDS polypeptide=Glyma.18g252100.3.p locus=Glyma.18g252100 ID=Glyma.18g252100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGA

>Glyma.18g252100.4 sequence-type=CDS polypeptide=Glyma.18g252100.4.p locus=Glyma.18g252100 ID=Glyma.18g252100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGGAATAGTAAGAGGAAAGTTGGATCATCTGCGGCAATGCTTTCAGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGAAGTTACACATTGTAAACAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGA
Predicted protein sequences of Glyma.18g252100
>Glyma.18g252100.1.p sequence-type=predicted peptide transcript=Glyma.18g252100.1 locus=Glyma.18g252100 ID=Glyma.18g252100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGMVYKENYRGKEESSDEREIETLKMEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSGIVRGKLDHLRQCFQVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKANINFGGNEDICSESLSVMDYEDFGRLKRRRKILF*

>Glyma.18g252100.2.p sequence-type=predicted peptide transcript=Glyma.18g252100.2 locus=Glyma.18g252100 ID=Glyma.18g252100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKKLHIVNRPTLTLGAMRIFALNLLV*

>Glyma.18g252100.3.p sequence-type=predicted peptide transcript=Glyma.18g252100.3 locus=Glyma.18g252100 ID=Glyma.18g252100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKEAENTILNIVIDEDAHWMGNLVALAYLIFTWHAATDNTAFGSHRY*

>Glyma.18g252100.4.p sequence-type=predicted peptide transcript=Glyma.18g252100.4 locus=Glyma.18g252100 ID=Glyma.18g252100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSGIVRGKLDHLRQCFQVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKKLHIVNRPTLTLGAMRIFALNLLV*






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