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Report for Sequence Feature Glyma.18g249300

Feature Type:gene_model
Chromosome:Gm18
Start:53574959
stop:53577787
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g249300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G26360.1AT Ribosomal protein S21 family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
PF01165PFAM Ribosomal protein S21 JGI N/AIEA

Expression Patterns of Glyma.18g249300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g249300
ParalogEvidenceComments
Glyma.09g244200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g249300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g48440 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g249300
>Glyma.18g249300.1 sequence-type=CDS polypeptide=Glyma.18g249300.1.p locus=Glyma.18g249300 ID=Glyma.18g249300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTCAGTTGCAAGGCGTTTATCAAGCTTAGTCAGACATTCAGGTTTCACACCTGAACCCTTCAATAATGGGCATCATCAAATGCAGCAGCTCCAGCAATGCAGAGGCATAAGAGTGAAGGTCATGGGTGGGAACTTGGAAGCAGCATTGGGATTGATGCAGCGTAAGATGCAATCAAGTGGGATTGAGAGGATGATAAAGCAAGAACAAAGATTCCATATCAAAAACTCTGAGAAGCGTGTTTTAGCCCAAAAGAACTTGGAGCGGAAGATTCGATCTGAAGATCTTGCTAAGAAACTTAAGGCCATTATGATCAAGAAAGTCAGGGGTCTATGA
Predicted protein sequences of Glyma.18g249300
>Glyma.18g249300.1.p sequence-type=predicted peptide transcript=Glyma.18g249300.1 locus=Glyma.18g249300 ID=Glyma.18g249300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNSVARRLSSLVRHSGFTPEPFNNGHHQMQQLQQCRGIRVKVMGGNLEAALGLMQRKMQSSGIERMIKQEQRFHIKNSEKRVLAQKNLERKIRSEDLAKKLKAIMIKKVRGL*






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