Glyma.18g248300

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Report for Sequence Feature Glyma.18g248300

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53526586
stop:	53534541
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g248300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79500.1	AT	Aldolase-type TIM barrel family protein	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008676	GO-mf	3-deoxy-8-phosphooctulonate synthase activity	EnsemblGenomes	N/A	IEA
PTHR21057	Panther	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE	JGI	N/A	IEA
PTHR21057:SF2	Panther	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 1-RELATED	JGI	N/A	IEA
PF00793	PFAM	DAHP synthetase I family	JGI	N/A	IEA
PWY-1269	SoyCyc9	CMP-3-deoxy-D-manno-octulosonate biosynthesis	Plant Metabolic Network		ISS
PWY-5111	SoyCyc9	CMP-KDO biosynthesis II (from D-arabinose 5-phosphate)	Plant Metabolic Network		ISS
GN7V-55684	SoyCyc9-rxn	3-deoxy-8-phosphooctulonate synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.18g248300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g248300 not represented in the dataset	Glyma.18g248300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g248300

Paralog	Evidence	Comments
Glyma.09g244900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g248300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g48370	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g248300

Limit To All Plant Sequences

>Glyma.18g248300.2 sequence-type=transcript locus=Glyma.18g248300 ID=Glyma.18g248300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAATTTGGAGTGCAATAATTCTGATTCTACCGTCATCAACTAGGAGAAGAAGCTTCATTTTCTGCAAAATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAAAAAAAATGGTGATGGTTTTCAGTTATTCTGAATGTAATTTCTTTACCATTGGTCTTTTAAGATTGTTCAAGGGTGAATGCAAAACTGTCTCCTCTCACAAGTTCCTTATAAGGAGAGTTTATCTTAAAAATATTATTTGATGATCAATGCATGTTACTCTGAAGTGGTAACACTATACCAACTCAAGTTTGTCACATATCCTGTGTAGCCTTAATCATGTCAGTTACTAAAGTTGAGGCAATTAATTGAATATTAAGATATAGGTAGATTAATTATTAAATTTATTATTAGGTAAATTAATTTATTATTTTTGTCATTTCTCCCAAGTACTTTCTACAAGGTTTTCAAGCCATTTCTAAAATATCTCAAAATTTTGGCTGTGGCTTAGGGATATTGTTTACGATTTAGGAGAAATATCAGAAAATGATGTATAAGGATATATGGTTTAATGCATGATCTACTTGGTAAATTGTATTGGTGCCTCATTATTTAAAAACACTATCAGTGGTTATGCACTAATT

>Glyma.18g248300.3 sequence-type=transcript locus=Glyma.18g248300 ID=Glyma.18g248300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAATTTGGAGTGCAATAATTCTGATTCTACCGTCATCAACTAGGAGAAGAAGCTTCATTTTCTGCAAAATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTTTTTGATATATTGTAGAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAAAAAAAATGGTGATGGTTTTCAGTTATTCTGAATGTAATTTCTTTACCATTGGTCTTTTAAGATTGTTCAAGGGTGAATGCAAAACTGTCTCCTCTCACAAGTTCCTTATAAGGAGAGTTTATCTTAAAAATATTATTTGATGATCAATGCATGTTACTCTGAAGTGGTAACACTATACCAACTCAAGTTTGTCACATATCCTGTGTAGCCTTAATCATGTCAGTTACTAAAGTTGAGGCAATTAATTGAATATTAAGATATAGGTAGATTAATTATTAAATTTATTATTAGGTAAATTAATTTATTATTTTTGTCATTTCTCCCAAGTACTTTCTACAAGGTTTTCAAGCCATTTCTAAAATATCTCAAAATTTTGGCTGTGGCTTAGGGATATTGTTTACGATTTAGGAGAAATATCAGAAAATGATGTATAAGGATATATGGTTTAATGCATGATCTACTTGGTAAATTGTATTGGTGCCTCATTATTTAAAAACACTATCAGTGGTTATGCACTAATT

Coding sequences of Glyma.18g248300

Limit To All Plant Sequences

>Glyma.18g248300.1 sequence-type=CDS polypeptide=Glyma.18g248300.1.p locus=Glyma.18g248300 ID=Glyma.18g248300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAA

>Glyma.18g248300.2 sequence-type=CDS polypeptide=Glyma.18g248300.2.p locus=Glyma.18g248300 ID=Glyma.18g248300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAA

>Glyma.18g248300.3 sequence-type=CDS polypeptide=Glyma.18g248300.3.p locus=Glyma.18g248300 ID=Glyma.18g248300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTTTTTGA

Predicted protein sequences of Glyma.18g248300

Limit To All Plant Sequences

>Glyma.18g248300.1.p sequence-type=predicted peptide transcript=Glyma.18g248300.1 locus=Glyma.18g248300 ID=Glyma.18g248300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKSVASEVGIPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKIAYDIPIVTDVHETIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKMLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHFKELLEELVAIARVSKGKQRFNIDLTPFRE*

>Glyma.18g248300.2.p sequence-type=predicted peptide transcript=Glyma.18g248300.2 locus=Glyma.18g248300 ID=Glyma.18g248300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKSVASEVGIPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKIAYDIPIVTDVHETIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKMLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHFKELLEELVAIARVSKGKQRFNIDLTPFRE*

>Glyma.18g248300.3.p sequence-type=predicted peptide transcript=Glyma.18g248300.3 locus=Glyma.18g248300 ID=Glyma.18g248300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKSVASEVGIPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKIAYDIPIVTDVHETIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKMLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHFKELLEELVAIAF*

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