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Report for Sequence Feature Glyma.18g248100

Feature Type:gene_model
Chromosome:Gm18
Start:53511479
stop:53516777
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g248100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17070.1AT peptidyl-prolyl cis-trans isomerases JGI N/AIEA
GO:0000413GO-bp protein peptidyl-prolyl isomerization EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity JGI N/AIEA
KOG0884 KOG Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase JGI N/AIEA
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI N/AIEA

Proteins Associated with Glyma.18g248100
LocusGene SymbolProtein Name
CYP29 peptidyl-prolyl cis-trans isomerase CYP29

Expression Patterns of Glyma.18g248100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g248100
ParalogEvidenceComments
Glyma.09g245200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g248100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g48350 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g248100
>Glyma.18g248100.1 sequence-type=CDS polypeptide=Glyma.18g248100.1.p locus=Glyma.18g248100 ID=Glyma.18g248100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCGTCGCCAAAACGACTCAGATTTCGGTAGATTCGCGATTCTCGTCCTCTTCTTGATAGGTGCAATCTCCTGCTCCGCGGTGTACCTTTTCCTTACTGTGGTCTTCAGGCCCAGCACCGAGTCTCTGCCTTCAGTGGATGATGATGTGGGGGTTGCAGAAGAGGAGAATTGTTGCAGAGGGATTGAAAATTTGGAGCTTTGGGGTGATGCTGTGAAATGGGGTTCTGAATTTAGGTTGAATTCCTCGGAGGAATGTTGCATGGCTTGTAAGAGAATGTGTAGCGGCGAGGGAGGGCCTTGTATGTGTAATTCATGGGTGTATTGTGGAGATAGAGAGGCTTGTGGACCTAGATTTGGCGAGTGTTGGTTAAAAAAACAAAAGGATGCTTTAAATCCTGATCGACGAGACTCGGGAGATCTAGTAATGTGGACTTCTGGGTTTGTCTTTGATAAGGGAGAGGGAATTGTTGGTATGGAAACTGACCATGGAATTCTTCGAATAAAACTTTTGCCTGAATGTGCTCCACATTCTGTTTCCTACATTCTGGAGCTGTTGGCATTGCCACATTGTGTTGGTTGCCAGCTTCATCGTGCTGAAAGCCGAGGAAGCTTTTGGGATTCAGAAGGAAACCACATTAAAAAGGCTCCATATGGTCCTCCTTTCGCACTTATTCAAGGAACATTGGAATCCTATGGGTCTATGTTCAAGGATATTCCTAAAGAGCACTGTCCTACCATAAGAAGAGGATCTGTTGCATGGGTTGGTTCTGGTCCAGAATTCTTCATCAGCCTCGCCGATCACGGGGAATGGAGAAATGCATACACTGTGTTTGGTTCTGTTCTATCTGAAGATATGGAAATTTTAGAGAAAATTGCTCAGCTTCCAACTAAATCAGAAATTTGGAATAATATTAAAGTTTCTGTCTTGGAGAACCCAGTTTCATTACGGTTTCGGAGAATGAACAAAAAGTCTTAA
Predicted protein sequences of Glyma.18g248100
>Glyma.18g248100.1.p sequence-type=predicted peptide transcript=Glyma.18g248100.1 locus=Glyma.18g248100 ID=Glyma.18g248100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRRQNDSDFGRFAILVLFLIGAISCSAVYLFLTVVFRPSTESLPSVDDDVGVAEEENCCRGIENLELWGDAVKWGSEFRLNSSEECCMACKRMCSGEGGPCMCNSWVYCGDREACGPRFGECWLKKQKDALNPDRRDSGDLVMWTSGFVFDKGEGIVGMETDHGILRIKLLPECAPHSVSYILELLALPHCVGCQLHRAESRGSFWDSEGNHIKKAPYGPPFALIQGTLESYGSMFKDIPKEHCPTIRRGSVAWVGSGPEFFISLADHGEWRNAYTVFGSVLSEDMEILEKIAQLPTKSEIWNNIKVSVLENPVSLRFRRMNKKS*






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