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Report for Sequence Feature Glyma.18g247300

Feature Type:gene_model
Chromosome:Gm18
Start:53463296
stop:53470011
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g247300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20260.1AT ATPase, V1 complex, subunit B protein JGI N/AIEA
AT4G38510.5AT ATPase, V1 complex, subunit B protein JGI N/AIEA
GO:0015991GO-bp ATP hydrolysis coupled proton transport EnsemblGenomesN/AIEA
GO:0015991GO-bp ATP hydrolysis coupled proton transport JGI N/AIEA
GO:0046034GO-bp ATP metabolic process EnsemblGenomesN/AIEA
GO:0046034GO-bp ATP metabolic process JGI N/AIEA
GO:1902600GO-bp proton transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0033178GO-cc proton-transporting two-sector ATPase complex, catalytic domain JGI N/AIEA
GO:0033180GO-cc proton-transporting V-type ATPase, V1 domain EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG1351 KOG Vacuolar H+-ATPase V1 sector, subunit B JGI N/AIEA
PTHR15184Panther ATP SYNTHASE JGI N/AIEA
PTHR15184:SF11Panther ATPASE, H+ TRANSPORTING, LYSOSOMAL V1 SUBUNIT B2-RELATED JGI N/AIEA
PF00006PFAM ATP synthase alpha/beta family, nucleotide-binding domain JGI N/AIEA
PF00306PFAM ATP synthase alpha/beta chain, C terminal domain JGI N/AIEA
PF02874PFAM ATP synthase alpha/beta family, beta-barrel domain JGI N/AIEA

Expression Patterns of Glyma.18g247300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g247300
ParalogEvidenceComments
Glyma.09g245700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g247300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g48280 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g247300
>Glyma.18g247300.2 sequence-type=transcript locus=Glyma.18g247300 ID=Glyma.18g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTGGGCCATCTATTAGATCTGTCACATACACACCCACATCGACCATCTTCTCTCTTCTCTCTTCCTTTTCAGATCACACGCACACAGTTACGCTCTTCAAATCTATCTCTTCTCAGCGATTCTTGCTTCAAGTTCCAGAAATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGGTCTGGTTTTGCCTGCTTACCACATTGCTATTTTTTCTGTTTATAAACCATCTCATTGGTGTTATTTTGTTTCTTTTAAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTCCACCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCAGTAACTGAGGATATAATAATAGCAAGGTCTTATAAGTTATACCTTAGTCACATGCTCAATCATCTTGTAATGACCCTGACTATTGTTTTATTTCTTAGATTTCTCATCCAACAATCTTTATTTCTTCTATCACACCATATTCATCATATATAATAAAAGGTTTGAGTGCCTCAGTTTGTTGGATATTTTGATTTCCTGTGCCATGTTTTTTCAATTAGT
Coding sequences of Glyma.18g247300
>Glyma.18g247300.1 sequence-type=CDS polypeptide=Glyma.18g247300.1.p locus=Glyma.18g247300 ID=Glyma.18g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTCCACCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCAGTAACTGA

>Glyma.18g247300.2 sequence-type=CDS polypeptide=Glyma.18g247300.2.p locus=Glyma.18g247300 ID=Glyma.18g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGGTCTGGTTTTGCCTGCTTACCACATTGCTATTTTTTCTGTTTATAAACCATCTCATTGGTGTTATTTTGTTTCTTTTAAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGA
Predicted protein sequences of Glyma.18g247300
>Glyma.18g247300.1.p sequence-type=predicted peptide transcript=Glyma.18g247300.1 locus=Glyma.18g247300 ID=Glyma.18g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDASN*

>Glyma.18g247300.2.p sequence-type=predicted peptide transcript=Glyma.18g247300.2 locus=Glyma.18g247300 ID=Glyma.18g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQVWFCLLTTLLFFLFINHLIGVILFLLSSMQIMPLERMSRQ*






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