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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G20260.1 | AT | ATPase, V1 complex, subunit B protein | JGI | N/A | IEA |
| AT4G38510.5 | AT | ATPase, V1 complex, subunit B protein | JGI | N/A | IEA |
| GO:0015991 | GO-bp | ATP hydrolysis coupled proton transport | EnsemblGenomes | N/A | IEA |
| GO:0015991 | GO-bp | ATP hydrolysis coupled proton transport | JGI | N/A | IEA |
| GO:0046034 | GO-bp | ATP metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0046034 | GO-bp | ATP metabolic process | JGI | N/A | IEA |
| GO:1902600 | GO-bp | proton transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0033178 | GO-cc | proton-transporting two-sector ATPase complex, catalytic domain | JGI | N/A | IEA |
| GO:0033180 | GO-cc | proton-transporting V-type ATPase, V1 domain | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| KOG1351 | KOG | Vacuolar H+-ATPase V1 sector, subunit B | JGI | N/A | IEA |
| PTHR15184 | Panther | ATP SYNTHASE | JGI | N/A | IEA |
| PTHR15184:SF11 | Panther | ATPASE, H+ TRANSPORTING, LYSOSOMAL V1 SUBUNIT B2-RELATED | JGI | N/A | IEA |
| PF00006 | PFAM | ATP synthase alpha/beta family, nucleotide-binding domain | JGI | N/A | IEA |
| PF00306 | PFAM | ATP synthase alpha/beta chain, C terminal domain | JGI | N/A | IEA |
| PF02874 | PFAM | ATP synthase alpha/beta family, beta-barrel domain | JGI | N/A | IEA |
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Glyma.18g247300 not represented in the dataset |
Glyma.18g247300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g245700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g48280 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g247300.2 sequence-type=transcript locus=Glyma.18g247300 ID=Glyma.18g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATTTGGGCCATCTATTAGATCTGTCACATACACACCCACATCGACCATCTTCTCTCTTCTCTCTTCCTTTTCAGATCACACGCACACAGTTACGCTCTTCAAATCTATCTCTTCTCAGCGATTCTTGCTTCAAGTTCCAGAAATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGGTCTGGTTTTGCCTGCTTACCACATTGCTATTTTTTCTGTTTATAAACCATCTCATTGGTGTTATTTTGTTTCTTTTAAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTCCACCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCAGTAACTGAGGATATAATAATAGCAAGGTCTTATAAGTTATACCTTAGTCACATGCTCAATCATCTTGTAATGACCCTGACTATTGTTTTATTTCTTAGATTTCTCATCCAACAATCTTTATTTCTTCTATCACACCATATTCATCATATATAATAAAAGGTTTGAGTGCCTCAGTTTGTTGGATATTTTGATTTCCTGTGCCATGTTTTTTCAATTAGT
>Glyma.18g247300.1 sequence-type=CDS polypeptide=Glyma.18g247300.1.p locus=Glyma.18g247300 ID=Glyma.18g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTCCACCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCAGTAACTGA >Glyma.18g247300.2 sequence-type=CDS polypeptide=Glyma.18g247300.2.p locus=Glyma.18g247300 ID=Glyma.18g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGGTCTGGTTTTGCCTGCTTACCACATTGCTATTTTTTCTGTTTATAAACCATCTCATTGGTGTTATTTTGTTTCTTTTAAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGA
>Glyma.18g247300.1.p sequence-type=predicted peptide transcript=Glyma.18g247300.1 locus=Glyma.18g247300 ID=Glyma.18g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDASN* >Glyma.18g247300.2.p sequence-type=predicted peptide transcript=Glyma.18g247300.2 locus=Glyma.18g247300 ID=Glyma.18g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQVWFCLLTTLLFFLFINHLIGVILFLLSSMQIMPLERMSRQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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