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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48370.1 | AT | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | JGI | N/A | IEA |
| KOG2763 | KOG | Acyl-CoA thioesterase | JGI | N/A | IEA |
| PTHR12655 | Panther | ACYL-COA THIOESTERASE | JGI | N/A | IEA |
| PF03061 | PFAM | Thioesterase superfamily | JGI | N/A | IEA |
| PWY-1121 | SoyCyc9 | suberin monomers biosynthesis | Plant Metabolic Network | ISS | |
| PWY-321 | SoyCyc9 | cutin biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5148 | SoyCyc9 | acyl-CoA hydrolysis | Plant Metabolic Network | ISS | |
| PWY-6733 | SoyCyc9 | sporopollenin precursors biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-48260 | SoyCyc9-rxn | acyl-CoA hydrolase | Plant Metabolic Network | ISS |
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Glyma.18g246900 not represented in the dataset |
Glyma.18g246900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g246100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g48220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g246900.1 sequence-type=CDS polypeptide=Glyma.18g246900.1.p locus=Glyma.18g246900 ID=Glyma.18g246900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATTTGAATTCCTCTCCTTCCAACAACACAATTGCCGTGAATGGAACAATCCCCGTCGCTTCCACGTTCGCAACCGCCACCGCGCCGTCGGATAACCCTCCGCCGGCGGACAGCTCCGGCGACCGGAAACCCATCGCCCTGTGGCCGGGGATGTACCATTCTCCGGTGACCACCGCCCTATGGGAAGCTCGCAGCAATATTTTCGAGAGGCTTCTGGACCCTCCCAGGGACGCTCCTCCGCAGAGTGAATTGCTCACGAGAACCCCCTCGCAGAGCAGGACCAGCATCTTGTACAACTTCTCCTCTGATTTCGTGCTCAGAGAACAGTATAGGGATCCCTGGAATGAGGTTCGAATTGGGAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGCATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTCAGTTGATAAGATTGTACTAAAGAAGCCAATTAGTGTTGACATTGATCTCAAGATAGTTGGTTTTGTTATATGGGTTGGGCACTCTTCAATAGAGATTCAACTGGAGGTTACTCAGTCCAATGAAGAGGGCAATGATTCAGACTCAGTAGCACTGACAGCCAACTTCATATTTGTTGCTCGGGACTCAAAAACTGGGAAAGCTGCTCCGGTGAATCGACTTTCACCAGAAAATGCTCATGAAAAACTTCTGTTTGAACAAGCTGAGGCAAGAAGTAATTTGAGGAAAACGAAAAGAGGAGGGGAAAAGAGGGACTTTGAGAATGGGGAGAAAAATAGGCTTCGGGCCCTATTGGCTGAAGGAAGAATCTTCTGTGACATGCCAGCTTTAGCAGACCGAAACAGCATTCTTCTAAAGGATACCAGCCTTGAGAATGCCTTAATATGCCAGCCACAGCAAAGGAACATCCATGGTCGAATATTTGGAGGTTTCTTGATGCATCGTGCATTTGAATTGGCTTTCTCAACAGCATATGCCTTTGCTGGATTAGCTCCTTGCTTTCTTGAAGTTGATCATGTTGATTTCTTAAGACCTGTTGATGTAGGGGACTTTTTGCGTCTCAAATCTTGTGTTCTGTACACGGAGGTTCACGATCCAGATCAGCCACTTATCAACGTTGAAGTTGTTGCTCATGTTACACGACCTGAGCTGCGTACTAGTGAGGTATCAAATACTTTCCACTTCTCTTTCACTGTCCGTCCAGAAGCCAAGGCGATGAAAAATGGATTTAAACTTCGCAATGTAGTACCAGCAACAGAGGAAGAAGCACGACGTATATTAGAGCGCATAGATGCTGACAACTTGAATGAATTCTTCAGAGCATAA
>Glyma.18g246900.1.p sequence-type=predicted peptide transcript=Glyma.18g246900.1 locus=Glyma.18g246900 ID=Glyma.18g246900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDLNSSPSNNTIAVNGTIPVASTFATATAPSDNPPPADSSGDRKPIALWPGMYHSPVTTALWEARSNIFERLLDPPRDAPPQSELLTRTPSQSRTSILYNFSSDFVLREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDEASTTRPLIVVTASVDKIVLKKPISVDIDLKIVGFVIWVGHSSIEIQLEVTQSNEEGNDSDSVALTANFIFVARDSKTGKAAPVNRLSPENAHEKLLFEQAEARSNLRKTKRGGEKRDFENGEKNRLRALLAEGRIFCDMPALADRNSILLKDTSLENALICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGLAPCFLEVDHVDFLRPVDVGDFLRLKSCVLYTEVHDPDQPLINVEVVAHVTRPELRTSEVSNTFHFSFTVRPEAKAMKNGFKLRNVVPATEEEARRILERIDADNLNEFFRA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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