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Report for Sequence Feature Glyma.18g245200

Feature Type:gene_model
Chromosome:Gm18
Start:53297092
stop:53306776
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g245200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65540.1AT LETM1-like protein JGI N/AIEA
GO:0006875GO-bp cellular metal ion homeostasis EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding EnsemblGenomesN/AIEA
KOG1043 KOG Ca2+-binding transmembrane protein LETM1/MRS7 JGI N/AIEA
PTHR14009Panther LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN JGI N/AIEA
PTHR14009:SF1Panther LETM1 AND EF-HAND DOMAIN-CONTAINING PROTEIN ANON-60DA, MITOCHONDRIAL JGI N/AIEA
PF07766PFAM LETM1-like protein JGI N/AIEA

Expression Patterns of Glyma.18g245200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g245200
ParalogEvidenceComments
Glyma.09g247500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g245200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g48050 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g245200
>Glyma.18g245200.2 sequence-type=transcript locus=Glyma.18g245200 ID=Glyma.18g245200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTGAACACGTCGGCGCAATACACACACATGCACTGTGGTAAAAGTAAAAAAATGTTTCATCAATGGAAAAATTGGAAGCGCTCAGAGTGTTGTTCTTGTTCCCTTATTCACTCATAACAATCATTTCATTCCACGATTGAGCTATTATCGAAGACGCGCATTTCCTCCTCTCTCCGGTTTGCAATTCTCGATTTGCCTCTGGCGGCGGTGCTGTGAAGTGAACTAAGTAACACCGTGAAAACGACTCTCTTTCCGTGCGTTGTTTTCATGAGCGACGGTGATAAATTTCTGCATTCTTTGTATCCATGGCATTGAAAGTTGAAACATTGAATTAGTAAGGGTTTTGTTTGGGGAGAACTGGCATCAGAAGCTAGAATCTGTTGTTATGGCTTCAAGAGTGATTTTGCAAAAGAGAAGGAGCCTCTTCTTCAACCCCCTATGTAGTCAACCTACTTGCATTATTTTTGGATTCTCACGTGTTGGGCATGCTCAGCCATTAGAATCTAGTGAATTAGAAGGTTTGAGCCGGTTTCCCTTATGTCCATCTGCAACTACGGAAAATGGACAGGAAAAAAAATTATTTACTGTCAACAAAGATGATCTTGCAGCTTATCCTGCTTTGAGATTTATCTCGCCTAGTTCCTTTAGAGTATCAAGTTTTGGATTTAGATCTGACAAGATAGAGTTGGTTTATCTTTCAAGATTGGGGTGGTTATCCCAATGTACCCGTAATATTTCCATGGCTTCAGCTGATCAATCTGGATTGGCTAGCAATAATAAGGGAAGTGAACAATCAGCTACTAAACAGAAAAAGGAAGCTTCACCAGAGGAATGCGATGAAGCTGTTGAAGGCTTGAGCAGCATaaaagcaaaagctaaggctaaacaaatgcaaGAACCACATAAGAGTGCGGATTCTATTATAAAGAAATTATGGGCTAAGATTTTAGGAATTGGTCCAGCATTCAGAACTATAATGTCAATGAGCAGGGATGACTGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAATCTACCCTGCAACACTACTGGTTTGGTACAAAACTACTTTGGGCTGATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGCCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAGCTGATATTTTCAGGCTAGTTCCATTTGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAGGAGATTCAGAACTCACAAAGTGGAGAAATGAAGAAGACAGCAGAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAATGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAGGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCCATATGGAACTGATGCATATTTGCGTTACATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAACTGATTCAAGTTGAGGGTGTCGAATCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTGCTTGGATTACTTTCAGTGGAAGAAATGCGGCAGCAGCTTAGGGACTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATATCTTGAAATGCAAGAGGAGCTGATCAAGGAGGAGGAAAAGAAAGAGGAGGCAGAGCAGGCCAAAATGGTAGAATCTGTTGGTAGTGAAGGGGATTTGGGTATTATGAAAGAGAGGGCTTCAACAACCAACCAAACACAAGGAGAGGTAAAAGCAAAGACATTGGATAAACAGGAGCACCTCTGGGAGCTCAGCCGTGCATTAGCCGTTTTAGCATCAGCATCTTCGGTGAGCAGGGAACGTGAAGAGTTTTTGAGGCTTGTTAGAAAGGAGGTATATAGATTCTATTGCATATGAATACTTTATGGCCCTTCAAAGAAAAGTCAAATTGCAATATCTTTTGAATGTAATTTAGTATGTTTCTGCATTCACATTATTTAACATTGATTTGTTAAAAATTGATTTGCTGGATAAAATAAATGCATTTTGTTAGAAGCTTAGAATTTAACTTTTGTCACCATTTGTTCCCAATAAAAAAATCAGTAATTGAGTTTCAGTTCTTGATCTTGACATTATCATCATTG
Coding sequences of Glyma.18g245200
>Glyma.18g245200.1 sequence-type=CDS polypeptide=Glyma.18g245200.1.p locus=Glyma.18g245200 ID=Glyma.18g245200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCAAGAGTGATTTTGCAAAAGAGAAGGAGCCTCTTCTTCAACCCCCTATGTAGTCAACCTACTTGCATTATTTTTGGATTCTCACGTGTTGGGCATGCTCAGCCATTAGAATCTAGTGAATTAGAAGGTTTGAGCCGGTTTCCCTTATGTCCATCTGCAACTACGGAAAATGGACAGGAAAAAAAATTATTTACTGTCAACAAAGATGATCTTGCAGCTTATCCTGCTTTGAGATTTATCTCGCCTAGTTCCTTTAGAGTATCAAGTTTTGGATTTAGATCTGACAAGATAGAGTTGGTTTATCTTTCAAGATTGGGGTGGTTATCCCAATGTACCCGTAATATTTCCATGGCTTCAGCTGATCAATCTGGATTGGCTAGCAATAATAAGGGAAGTGAACAATCAGCTACTAAACAGAAAAAGGAAGCTTCACCAGAGGAATGCGATGAAGCTGTTGAAGGCTTGAGCAGCATAAAAGCAAAAGCTAAGGCTAAACAAATGCAAGAACCACATAAGAGTGCGGATTCTATTATAAAGAAATTATGGGCTAAGATTTTAGGAATTGGTCCAGCATTCAGAACTATAATGTCAATGAGCAGGGATGACTGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAATCTACCCTGCAACACTACTGGTTTGGTACAAAACTACTTTGGGCTGATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGCCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAGCTGATATTTTCAGGCTAGTTCCATTTGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAGGAGATTCAGAACTCACAAAGTGGAGAAATGAAGAAGACAGCAGAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAATGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAGGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCCATATGGAACTGATGCATATTTGCGTTACATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAACTGATTCAAGTTGAGGGTGTCGAATCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTGCTTGGATTACTTTCAGTGGAAGAAATGCGGCAGCAGCTTAGGGACTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATATCTTGAAATGCAAGAGGAGCTGATCAAGGAGGAGGAAAAGAAAGAGGAGGCAGAGCAGGCCAAAATGGTAGAATCTGTTGGTAGTGAAGGGGATTTGGGTATTATGAAAGAGAGGGCTTCAACAACCAACCAAACACAAGGAGAGGTAAAAGCAAAGACATTGGATAAACAGGAGCACCTCTGGGAGCTCAGCCGTGCATTAGCCGTTTTAGCATCAGCATCTTCGGTGAGCAGGGAACGTGAAGAGTTTTTGAGGCTTGTTAGAAAGGAGATGGAGCTTTATGATAGTATGGTAGGGAAAGAAGGTACAGAAGGTGAGCAGGAAGCTAAGAATGCCTATAAAGCTGCAAGGAAGGAAAGTGATGGTGCTATTGAGGTAGCTATTGGTGATAAGGTTTCTTCAGCACTTGTTGACAGGGTTGATACTATGCTCCAGACACTTGAAAAAGAAATTGATGATGTTGATGCTAAAATTGGAGACCGCTGGCGGTTGCTAGACAGGGATTATGATGGGAAAGTGACACCTGAGGAGGTAGTATCTGCTGCTATGTATCTGAAGGACACTCTGAGCAAAGAAGGAATTCATGAGCTTATCAGCAACCTTTCCAAGGATAGCGATGGGAAAATATTGGTGGAAGACATTGTCAAATTGGGCACCCAGAAAGAAGAAGCCGATAGAGATGAAGCGGGAAGATCATAG

>Glyma.18g245200.2 sequence-type=CDS polypeptide=Glyma.18g245200.2.p locus=Glyma.18g245200 ID=Glyma.18g245200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCAAGAGTGATTTTGCAAAAGAGAAGGAGCCTCTTCTTCAACCCCCTATGTAGTCAACCTACTTGCATTATTTTTGGATTCTCACGTGTTGGGCATGCTCAGCCATTAGAATCTAGTGAATTAGAAGGTTTGAGCCGGTTTCCCTTATGTCCATCTGCAACTACGGAAAATGGACAGGAAAAAAAATTATTTACTGTCAACAAAGATGATCTTGCAGCTTATCCTGCTTTGAGATTTATCTCGCCTAGTTCCTTTAGAGTATCAAGTTTTGGATTTAGATCTGACAAGATAGAGTTGGTTTATCTTTCAAGATTGGGGTGGTTATCCCAATGTACCCGTAATATTTCCATGGCTTCAGCTGATCAATCTGGATTGGCTAGCAATAATAAGGGAAGTGAACAATCAGCTACTAAACAGAAAAAGGAAGCTTCACCAGAGGAATGCGATGAAGCTGTTGAAGGCTTGAGCAGCATAAAAGCAAAAGCTAAGGCTAAACAAATGCAAGAACCACATAAGAGTGCGGATTCTATTATAAAGAAATTATGGGCTAAGATTTTAGGAATTGGTCCAGCATTCAGAACTATAATGTCAATGAGCAGGGATGACTGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAATCTACCCTGCAACACTACTGGTTTGGTACAAAACTACTTTGGGCTGATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGCCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAGCTGATATTTTCAGGCTAGTTCCATTTGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAGGAGATTCAGAACTCACAAAGTGGAGAAATGAAGAAGACAGCAGAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAATGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAGGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCCATATGGAACTGATGCATATTTGCGTTACATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAACTGATTCAAGTTGAGGGTGTCGAATCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTGCTTGGATTACTTTCAGTGGAAGAAATGCGGCAGCAGCTTAGGGACTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATATCTTGAAATGCAAGAGGAGCTGATCAAGGAGGAGGAAAAGAAAGAGGAGGCAGAGCAGGCCAAAATGGTAGAATCTGTTGGTAGTGAAGGGGATTTGGGTATTATGAAAGAGAGGGCTTCAACAACCAACCAAACACAAGGAGAGGTAAAAGCAAAGACATTGGATAAACAGGAGCACCTCTGGGAGCTCAGCCGTGCATTAGCCGTTTTAGCATCAGCATCTTCGGTGAGCAGGGAACGTGAAGAGTTTTTGAGGCTTGTTAGAAAGGAGGTATATAGATTCTATTGCATATGA
Predicted protein sequences of Glyma.18g245200
>Glyma.18g245200.1.p sequence-type=predicted peptide transcript=Glyma.18g245200.1 locus=Glyma.18g245200 ID=Glyma.18g245200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASRVILQKRRSLFFNPLCSQPTCIIFGFSRVGHAQPLESSELEGLSRFPLCPSATTENGQEKKLFTVNKDDLAAYPALRFISPSSFRVSSFGFRSDKIELVYLSRLGWLSQCTRNISMASADQSGLASNNKGSEQSATKQKKEASPEECDEAVEGLSSIKAKAKAKQMQEPHKSADSIIKKLWAKILGIGPAFRTIMSMSRDDWAKKFRHWWDEFKSTLQHYWFGTKLLWADIRISSRLLLKLAGGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNSQSGEMKKTAEDLDEFMNKVRTGARVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLRKRLQEIKNDDKLIQVEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTTLPSEDSVSERKRKLEYLEMQEELIKEEEKKEEAEQAKMVESVGSEGDLGIMKERASTTNQTQGEVKAKTLDKQEHLWELSRALAVLASASSVSREREEFLRLVRKEMELYDSMVGKEGTEGEQEAKNAYKAARKESDGAIEVAIGDKVSSALVDRVDTMLQTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVVSAAMYLKDTLSKEGIHELISNLSKDSDGKILVEDIVKLGTQKEEADRDEAGRS*

>Glyma.18g245200.2.p sequence-type=predicted peptide transcript=Glyma.18g245200.2 locus=Glyma.18g245200 ID=Glyma.18g245200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASRVILQKRRSLFFNPLCSQPTCIIFGFSRVGHAQPLESSELEGLSRFPLCPSATTENGQEKKLFTVNKDDLAAYPALRFISPSSFRVSSFGFRSDKIELVYLSRLGWLSQCTRNISMASADQSGLASNNKGSEQSATKQKKEASPEECDEAVEGLSSIKAKAKAKQMQEPHKSADSIIKKLWAKILGIGPAFRTIMSMSRDDWAKKFRHWWDEFKSTLQHYWFGTKLLWADIRISSRLLLKLAGGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNSQSGEMKKTAEDLDEFMNKVRTGARVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLRKRLQEIKNDDKLIQVEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTTLPSEDSVSERKRKLEYLEMQEELIKEEEKKEEAEQAKMVESVGSEGDLGIMKERASTTNQTQGEVKAKTLDKQEHLWELSRALAVLASASSVSREREEFLRLVRKEVYRFYCI*






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