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Report for Sequence Feature Glyma.18g244500

Feature Type:gene_model
Chromosome:Gm18
Start:53223323
stop:53229990
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g244500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03310.1AT lecithin:cholesterol acyltransferase 3 JGI N/AIEA
GO:0006505GO-bp GPI anchor metabolic process JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0008374GO-mf O-acyltransferase activity EnsemblGenomesN/AIEA
GO:0008374GO-mf O-acyltransferase activity JGI N/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds JGI N/AIEA
KOG2369 KOG Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase JGI N/AIEA
PTHR11440Panther LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED JGI N/AIEA
PTHR11440:SF3Panther LECITHINE-CHOLESTEROL ACYLTRANSFERASE-LIKE 4-RELATED JGI N/AIEA
PF02450PFAM Lecithin:cholesterol acyltransferase JGI N/AIEA
LIPASYN-PWYSoyCyc9 phospholipases Plant Metabolic Network ISS
PWY-6803SoyCyc9 phosphatidylcholine acyl editing Plant Metabolic Network ISS
GN7V-44665SoyCyc9-rxn phospholipase A1 Plant Metabolic Network ISS

Expression Patterns of Glyma.18g244500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g244500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g47970 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g244500
>Glyma.18g244500.1 sequence-type=CDS polypeptide=Glyma.18g244500.1.p locus=Glyma.18g244500 ID=Glyma.18g244500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGTTTTTGCCCGTGTTTTGGATCCGAGGAGGCCAAGGGGGTGGCGGATCGCGACCCGGTCCTGCTGGTTTCGGGCATGGGCGGCTCCATTGTCAATTCCAAGCCCAAGAAATTCGGGTTCACCACTCGGGTTTGGGTCAGACTCCTCCTCGCTGACGTCGAGTTCCGAAACAAGATTTGGTCCCTTTACAATCCCCAAACAGGTTACACTGAAACGTTGGACAAGAAGTCTGAAATTGTGGTCCCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATGGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGATTGACATGCTTGTTGGATGTGGTTACAACAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATAGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACAAAGCTTCTGGGGGAAGAAAAGTCAATTTGATTTCCCATTCCATGGGAGGAATCATGATATCGTGTTTCATGTCGCTTTATAGAGATGTGTTTACGAAATATGTGAATAAGTGGATTTGCTTGGCTTGCCCTTTCCAAGGAGCCCCAGGGTGCATCAATGATTCTTTATTAACTGGATTAGAGTTTGTTGATGGCTTTCAAAGCTATTTTTTTGTGAAAAGGTGGACTATGCATCAATTGCTAGTGGAGTGTCCATCAATCTATGAGATGTTGGCAAATCCATATTATGAATGGAAAAAGCAACCAGAAATTCTAGTTTGGCGAAAGCATACCAAGGATGGGGACAATAACATCAATTTGGAATCTTATGGACCAACCCAGAGTATCTCTTTATTTGAAGAAGCACTGAGGGACAATGAGGTAAATTATAAAGGGAAAACGATATCACTGCCTTTTAACTTTGATATCCTTGACTGGGCTGTTGAAACACGTCAACTTATAGCTAATGCTAAACTGCCAGATGGAGTCTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTTGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACACAATGCCACTATATTCTTACGTCGATGGAGATGGAACGGTTCCTTCTGAATCTGCCAAGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCGTGGAATATTACGAGATGAAACAGTGTTTCAACATATTCAAAAATGGTTGGGTGTTGAGCCAATGGTTGGCAAGCATTCTAAAACATCAAAAGTGGCAGATGCTCAGCCTATGGTTCTATGA
Predicted protein sequences of Glyma.18g244500
>Glyma.18g244500.1.p sequence-type=predicted peptide transcript=Glyma.18g244500.1 locus=Glyma.18g244500 ID=Glyma.18g244500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRFCPCFGSEEAKGVADRDPVLLVSGMGGSIVNSKPKKFGFTTRVWVRLLLADVEFRNKIWSLYNPQTGYTETLDKKSEIVVPDDDHGLYAIDILDPSWFTKCIHLTEVYHFHDMIDMLVGCGYNKGTTLFGYGYDFRQSNRIGKVMEGLKSKLETAHKASGGRKVNLISHSMGGIMISCFMSLYRDVFTKYVNKWICLACPFQGAPGCINDSLLTGLEFVDGFQSYFFVKRWTMHQLLVECPSIYEMLANPYYEWKKQPEILVWRKHTKDGDNNINLESYGPTQSISLFEEALRDNEVNYKGKTISLPFNFDILDWAVETRQLIANAKLPDGVCFYNIYGTSLDTPFDVCYGSENSPIEDLSEICHTMPLYSYVDGDGTVPSESAKGDGLEATERVGVAASHRGILRDETVFQHIQKWLGVEPMVGKHSKTSKVADAQPMVL*






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