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Report for Sequence Feature Glyma.18g244100

Feature Type:gene_model
Chromosome:Gm18
Start:53193558
stop:53202738
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g244100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08450.1AT calreticulin 3 JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding JGI N/AIEA
KOG0674 KOG Calreticulin JGI N/AIEA
PTHR11073Panther CALRETICULIN AND CALNEXIN JGI N/AIEA
PF00262PFAM Calreticulin family JGI N/AIEA

Expression Patterns of Glyma.18g244100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g244100 not represented in the dataset
Glyma.18g244100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g244100
ParalogEvidenceComments
Glyma.09g248600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g244100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g47931 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g244100
>Glyma.18g244100.1 sequence-type=CDS polypeptide=Glyma.18g244100.1.p locus=Glyma.18g244100 ID=Glyma.18g244100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTTCACTCGAAATCCAAACACACCCTAAATCATATTATGTACGTGATGCTGATGATTTCAGAAACAATGAGATAACACTTACTAAATGGAGAAATGAAGGCTCGAAAACTTTAGAGGACTTTAAGTCATCATTGACTATTCATACGCGTTCCTCAAGTCGTCCACGAAAAAACGTGGAAGGAGATTCAATAGAACACAAAATGTCTTTCTCACTTTGCCTTCTTCTGAACAAGTTTGTGTTGTTTTGTTTGTTGTTGCTAATACAAGTGGCAGTTTCTGAAATCATTTTTGAAGAGCGATTTGATGATGGATGGCGAAGTAGGTGGGTGAAATCAGACTGGAAAAGCAGTGAGGGCAAAGCAGGTTCATTCAAGCACACAGCTGGAAAATGGGCTGGTGATCCAGATGACAAAGGTATTCAAACATCCAGTGATGCCAAACACTTTGCCATCTCTGCAAAAATACCAGAATTCACAAACAAGAACAGAACATTGGTCCTTCAGTATTCTGTAAAATTTGAGCAAGAGATTGAATGTGGTGGAGGGTACATCAAGCTTCTCTCTGGATTTGTTAATCAAAAGAAGTTTGATTTATGTGGCACGGATACAAAGAAGCTCCATGTGATACTCTCCTACCACGGTCAAAATTACCCCATAAAGAAGGACCTGCAATGTGAAACTGACAGGCCAGATGCCACATACAGTGTCCTGGTTGATAATAGAGAGAGAGATTCTGGAAGCATGTATACAGATTGGGATATTCTTCCTCCACGAAAAATCAAAGATGTCAAGGCCAAAAAGCCTGCAGACTGGGAGGAAAGAGAATACATTGAAGACCCTGATGATGTCAAACCTGAGGGATATGATTCAATCCCAAGAGAAATTCCTGACCCAAATGCTAAAGAGCCTGAAAACTGGGATGAAGAGGAAGATGGGAAATGGAAACCACCAAAGATACCAAATCCAGCATACAAAGGACCATGGAAAAGAAAGAAAATCAAGAACCCTAACTACAAAGGGAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTGAAGACGACCCTGATCTTTATGTGCTTAAGCCTATCAAGTATGTAGGCATTGAAGTTTGGCAGGTTAAAGGCGGTTCAGTTTTTGACAACGTTTTGATTTGTGACGACCCTGATTATGCAAAACAAGTTGTTGAGGAGGTGTTTGCCAACAGGGAGATTGAAAAGGAAGGTTTTGAGGAAGCAGAGAAAGTGAGAAAAGCCAAAGAGGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGCGTAGACGAGAGAGAGGTCATGATCGACGATATCGGGACAGATATAGAGACAAATATAGAAGGTTGTTTTCCTATGTGCAGCATCGCTATGATTACGATGGTCATGTTATCGACAAAATACATTTTAAGTTTGCACGACTTGAGACTCAGAAACAGACTTGA
Predicted protein sequences of Glyma.18g244100
>Glyma.18g244100.1.p sequence-type=predicted peptide transcript=Glyma.18g244100.1 locus=Glyma.18g244100 ID=Glyma.18g244100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSLEIQTHPKSYYVRDADDFRNNEITLTKWRNEGSKTLEDFKSSLTIHTRSSSRPRKNVEGDSIEHKMSFSLCLLLNKFVLFCLLLLIQVAVSEIIFEERFDDGWRSRWVKSDWKSSEGKAGSFKHTAGKWAGDPDDKGIQTSSDAKHFAISAKIPEFTNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFDLCGTDTKKLHVILSYHGQNYPIKKDLQCETDRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWEEREYIEDPDDVKPEGYDSIPREIPDPNAKEPENWDEEEDGKWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNVLICDDPDYAKQVVEEVFANREIEKEGFEEAEKVRKAKEEEEAQRAREEGERRRRERGHDRRYRDRYRDKYRRLFSYVQHRYDYDGHVIDKIHFKFARLETQKQT*






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