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Report for Sequence Feature Glyma.18g243500

Feature Type:gene_model
Chromosome:Gm18
Start:53162330
stop:53167391
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g243500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16390.1AT chloroplastic acetylcoenzyme A carboxylase 1 JGI N/AIEA
AT5G16390.2AT chloroplastic acetylcoenzyme A carboxylase 1 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009317GO-cc acetyl-CoA carboxylase complex EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0003989GO-mf acetyl-CoA carboxylase activity EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
PTHR18866Panther CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE JGI N/AIEA
PTHR23151Panther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED JGI N/AIEA
PTHR23151:SF25Panther JGI N/AIEA
PF00364PFAM Biotin-requiring enzyme JGI N/AIEA
PWY-7388SoyCyc9 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Plant Metabolic Network ISS
GN7V-64824SoyCyc9-rxn acetyl-CoA carboxylase Plant Metabolic Network ISS

Proteins Associated with Glyma.18g243500
LocusGene SymbolProtein Name
ACCB-1 biotin carboxyl carrier protein precursor

Expression Patterns of Glyma.18g243500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g243500 not represented in the dataset
Glyma.18g243500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g243500
ParalogEvidenceComments
Glyma.09g248900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g243500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g47875 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g243500
>Glyma.18g243500.2 sequence-type=transcript locus=Glyma.18g243500 ID=Glyma.18g243500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTTAAAGAAGCGCCACTGGTTATGCGCCGTGTGTTACTGTTCTCAGTTCCCACCCATCACTTCACTTCCTTTCATCCAAACTCTTTTGCctctctctctctctctctctctgtcGTGTTTTTGATTTGAGAATTGAGATCGAGTCTTTTGAGACATGGCATCCTCGTTGGCACCAGCTACCAAAGCCGCCACTAATTTGCGCCTCACACACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGCCTGGTAATACGCTGTTATGCACGAGGGTTAAGGCCCAATTAAATGAGGTTGCCCTTGATAGTTCCTCCAATGCTACTTCTCCTCCTATGAAAGCCAAATCAAAGGAGGAACCACCCGCAAAGCCTTTAGCAGAACCATCTTCTTCAGTGTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAGCTTGTTGATTCAAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGACGTTGAAGTAACAATCAGGAAAAAGGAGGCTATGCCTCAGCCACCACCTGCTCCTCAACCTTCTGTGGTGTATTCACCCCCTCCACCAGCGTTGCCACCACCACCTGTACCAGCATCTACTCCAGCACCTACTCTAGCTCGTGCAACCCCTACACCAACTTCAGCCCCTGCTGTGAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATTGAAACTTCACAATAGGACAGATATGGATTTTTCCTTTTTCATTGGATGCCATGGTGTCACTATCTTCCCAATTGCTGAAGGTGGAAGTACTTCTGCTTGTGGCCACTCCAACAACGGAATTCCTGGTGTTTTTGCTTTAGTGGCTTCTGATCTGTTCTTGCTGGCTTGGATAATTGGGCGGTGATTCCTTCTTCTCCACAACCAATACCATTTCTTCAATTTGATCAAACTCTCTTTTTGCATCATCATTTTCCACATGTGTCTTACTGTTGACCTTGGTTATTGAGTGTTCCCCTTCAATCTCTACAATGATTTTGGATTGTTCTCCATTTTGCAGCTTATTTGTACCAATTCTTGTCTCTGATCATTTTAGACTCATTATAAAACATTGTTGTCTCTCCCAGATAGCAAGCATCCCAGTGAGCAAATGCTGCAGTTATCAAATCCTCCATAACTTTCCTTACTGCCAAGAGTATACATATTCATAATCTGAAATTTTTcactgatctcccctcagatccagcaggttggaccaatgccaggatcccagaaattagaacagaaatgagggttttatttaataaaaaaacagctcaatcagaagatacataagaggaatcactctctctctaagagCAAAAGCATCTTGGAGAAAATACTCTCTCTACCCGGCCAAAAGGCCTAACCACCAAAATGAACCTCCTCCCCTGTATCACTCTAACCTTGCTCCCCTATATACGTTCTAACAACTTGCCAACTGAGCTGCAAAATGGAGTCCAATAGTTGTGCCACTTGACCCATTATCTAAACTGAACA
Coding sequences of Glyma.18g243500
>Glyma.18g243500.1 sequence-type=CDS polypeptide=Glyma.18g243500.1.p locus=Glyma.18g243500 ID=Glyma.18g243500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCCTCGTTGGCACCAGCTACCAAAGCCGCCACTAATTTGCGCCTCACACACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGCCTGGTAATACGCTGTTATGCACGAGGGTTAAGGCCCAATTAAATGAGGTTGCCCTTGATAGTTCCTCCAATGCTACTTCTCCTCCTATGAAAGCCAAATCAAAGGAGGAACCACCCGCAAAGCCTTTAGCAGAACCATCTTCTTCAGTGTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAGCTTGTTGATTCAAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGACGTTGAAGTAACAATCAGGAAAAAGGAGGCTATGCCTCAGCCACCACCTGCTCCTCAACCTTCTGTGGTGTATTCACCCCCTCCACCAGCGTTGCCACCACCACCTGTACCAGCATCTACTCCAGCACCTACTCTAGCTCGTGCAACCCCTACACCAACTTCAGCCCCTGCTGTGAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATTGAAGCTGATCAGTCAGGAACTATAGTTGAAATCGTTGCGGAAGATGCCAAGTCTGTAAGCGTTGACACTCCCCTATTTGTGATTCAACCATAG

>Glyma.18g243500.2 sequence-type=CDS polypeptide=Glyma.18g243500.2.p locus=Glyma.18g243500 ID=Glyma.18g243500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCCTCGTTGGCACCAGCTACCAAAGCCGCCACTAATTTGCGCCTCACACACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGCCTGGTAATACGCTGTTATGCACGAGGGTTAAGGCCCAATTAAATGAGGTTGCCCTTGATAGTTCCTCCAATGCTACTTCTCCTCCTATGAAAGCCAAATCAAAGGAGGAACCACCCGCAAAGCCTTTAGCAGAACCATCTTCTTCAGTGTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAGCTTGTTGATTCAAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGACGTTGAAGTAACAATCAGGAAAAAGGAGGCTATGCCTCAGCCACCACCTGCTCCTCAACCTTCTGTGGTGTATTCACCCCCTCCACCAGCGTTGCCACCACCACCTGTACCAGCATCTACTCCAGCACCTACTCTAGCTCGTGCAACCCCTACACCAACTTCAGCCCCTGCTGTGAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATTGAAACTTCACAATAG
Predicted protein sequences of Glyma.18g243500
>Glyma.18g243500.1.p sequence-type=predicted peptide transcript=Glyma.18g243500.1 locus=Glyma.18g243500 ID=Glyma.18g243500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLAPATKAATNLRLTHSLRFSPKPNNLRFATKPGNTLLCTRVKAQLNEVALDSSSNATSPPMKAKSKEEPPAKPLAEPSSSVLATQESVSQFITQVASLVKLVDSRDIVELKLKQHDVEVTIRKKEAMPQPPPAPQPSVVYSPPPPALPPPPVPASTPAPTLARATPTPTSAPAVKSAKSSLPPLKSPMAGTFYRSPAPGEPSFVKVGDKVKKGQVVCIIEAMKLMNEIEADQSGTIVEIVAEDAKSVSVDTPLFVIQP*

>Glyma.18g243500.2.p sequence-type=predicted peptide transcript=Glyma.18g243500.2 locus=Glyma.18g243500 ID=Glyma.18g243500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLAPATKAATNLRLTHSLRFSPKPNNLRFATKPGNTLLCTRVKAQLNEVALDSSSNATSPPMKAKSKEEPPAKPLAEPSSSVLATQESVSQFITQVASLVKLVDSRDIVELKLKQHDVEVTIRKKEAMPQPPPAPQPSVVYSPPPPALPPPPVPASTPAPTLARATPTPTSAPAVKSAKSSLPPLKSPMAGTFYRSPAPGEPSFVKVGDKVKKGQVVCIIEAMKLMNEIETSQ*






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