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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24090.1 | AT | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:1901135 | GO-bp | carbohydrate derivative metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0030246 | GO-mf | carbohydrate binding | JGI | N/A | IEA |
| GO:0097367 | GO-mf | carbohydrate derivative binding | EnsemblGenomes | N/A | IEA |
| KOG1268 | KOG | Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains | JGI | N/A | IEA |
| PTHR10937 | Panther | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING | JGI | N/A | IEA |
| PF00310 | PFAM | Glutamine amidotransferases class-II | JGI | N/A | IEA |
| PF01380 | PFAM | SIS domain | JGI | N/A | IEA |
| UDPNACETYLGALSYN-PWY | SoyCyc9 | UDP-N-acetyl-D-glucosamine biosynthesis II | Plant Metabolic Network | ISS | |
| GN7V-61704 | SoyCyc9-rxn | glutamine-fructose-6-phosphate transaminase (isomerizing) | Plant Metabolic Network | ISS |
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Glyma.18g243300 not represented in the dataset |
Glyma.18g243300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g249100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g47860 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g243300.1 sequence-type=CDS polypeptide=Glyma.18g243300.1.p locus=Glyma.18g243300 ID=Glyma.18g243300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGTGGAATATTTGCGTATCTGAATTACAACCTCAACAGAGAGAGACAATACATCTTGCAGGTTCTCTTCAATGGCTTGAGGAGATTGGAGTACCGCGGATACGATTCCGCAGGCATCGCAATCGACGATTCCTCTTCTTCTCAATTCTCTCTTTCGCCTCCTCCTCTGGTTTTCCGTCAGGAAGGAAACATCGAATCGCTCGTCAAATCCGTCTATCAAGAAGTGGGAGAAACTGAACTGAACTTGGGGGAATGCTTCGGCACGCACGCGGGAATCGCGCACACTCGCTGGGCGACTCACGGAGAGCCTGCGCCGCGGAACAGTCACCCTCAGAGCTCTGGTCATGGGAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGGTTTTGAAGGAGACGCTGCTTAGACATGGCTTCACCTTTGAATCTGAAACTGACACCGAGGTCATCCCCAAGCTTGCCAAGTTTGTCCACGACAAGGCGAATGAAGCGTCCGGAGGTCAGGTTGTTACCTTCAGTCAAGTTGTTCTTGAAGTTATGAGGCATCTTGAAGGAGCTTATGCCCTTATTTTCAAAAGTCCACATTATCCTAATGAATTGATTGCCTGCAAGCGTGGTAGCCCACTGCTGCTAGGTGTTAAAGAATTGGCAGAAAATAAAGAACATGGTTCAGCATTTGAGGATAACAAATTCCTATCAAAAGATGGAAAGCCCAGAGAATTGTTTTTGTCCAGTGATGCCAATGCTGTGGTTGAGCATACAAAGAAAGTGCTAGTTATTGAGGATGGTGAAGTAGTTCATCTCAAGGATGGTGGGGTTTCTATTTTGAAATTTGAGAATGACATGGGAGAACATGGTGCTTCTCTTTCCAGAGCTTTCTCCGTGCGACGTGCATTATCTGTTCTTGAGATGGAGGTTGAGCAAATAAATAAAGGTAATTATGAGCATTACATGCAAAAGGAAATTCATGAGCAGCCAGAGTCTCTAACAACCACAATGAGGGGGAGGCTTATACATCGAGGATCTAACAAATCCAAGTCTGTTCTGCTGGGAGGGCTGAAGGATCACCTCAAAACAATTAGGCGAAGTAGAAGGATACTTTTCATTGGTTGTGGTACAAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCAGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGACCAATATACCGGGAGGATACTGCCGTTTTTGTTAGTCAATCTGGTGAAACTGCAGACACTTTACTTGCACTGCAATATGCTTTAGACAATGGTGCATTGTGTGTTGGGATAACAAACACTGTTGGTAGTGCAATAGCAAGGAATACACATTGTGGTGTTCATATAAATGCTGGGGCTGAGATTGGTGTGGCAAGTACCAAGGCATACACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGAGGCGATACAATTTCAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTTTGATCTGCCAAATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCAAAGCAGTTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACAACTATGCAACTGCTCTTGAGGGAGCTTTGAAAGTAAAGGAAGTGGCTCTAATGCATAGTGAAGGGATACTTGCTGGTGAGATGAAGCATGGTCCTTTGGCATTAGTGGATGAAAATCTCCCAATTGTTGTTTTAGCTACCCGTGATGCCTGCTTCAGCAAACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGATAGTTATGTGTTCAAAAGGGGATGCTTCCTCTGTATGCCCTAATGAATCTTGTAGGGTAATTGAAGTTCCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCCTCGTAATCTTGCCAAGAGTGTCACAACGCAATAA
>Glyma.18g243300.1.p sequence-type=predicted peptide transcript=Glyma.18g243300.1 locus=Glyma.18g243300 ID=Glyma.18g243300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MCGIFAYLNYNLNRERQYILQVLFNGLRRLEYRGYDSAGIAIDDSSSSQFSLSPPPLVFRQEGNIESLVKSVYQEVGETELNLGECFGTHAGIAHTRWATHGEPAPRNSHPQSSGHGNEFLVVHNGVITNYEVLKETLLRHGFTFESETDTEVIPKLAKFVHDKANEASGGQVVTFSQVVLEVMRHLEGAYALIFKSPHYPNELIACKRGSPLLLGVKELAENKEHGSAFEDNKFLSKDGKPRELFLSSDANAVVEHTKKVLVIEDGEVVHLKDGGVSILKFENDMGEHGASLSRAFSVRRALSVLEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIHRGSNKSKSVLLGGLKDHLKTIRRSRRILFIGCGTSYNAALAARPILEELSGVPVTMEIASDLLDREGPIYREDTAVFVSQSGETADTLLALQYALDNGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMVMLALAIGGDTISNQARREAIIDGLFDLPNKVREVLKLDLEMKDLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIVVLATRDACFSKQQSVIQQLNARRGRLIVMCSKGDASSVCPNESCRVIEVPLVEDCLQPVINVVPLQLLAYHLTVLRGHNVDQPRNLAKSVTTQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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