Glyma.18g242600

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Report for Sequence Feature Glyma.18g242600

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53086067
stop:	53091337
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g242600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47390.2	AT	cytidine/deoxycytidylate deaminase family protein	JGI	N/A	IEA
GO:0009231	GO-bp	riboflavin biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009231	GO-bp	riboflavin biosynthetic process	JGI	N/A	IEA
GO:0009451	GO-bp	RNA modification	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0008703	GO-mf	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	EnsemblGenomes	N/A	IEA
GO:0008703	GO-mf	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	JGI	N/A	IEA
GO:0008835	GO-mf	diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	JGI	N/A	IEA
GO:0019239	GO-mf	deaminase activity	EnsemblGenomes	N/A	IEA
GO:0050661	GO-mf	NADP binding	EnsemblGenomes	N/A	IEA
KOG1018	KOG	Cytosine deaminase FCY1 and related enzymes	JGI	N/A	IEA
PTHR11079	Panther	CYTOSINE DEAMINASE	JGI	N/A	IEA
PTHR11079:SF14	Panther		JGI	N/A	IEA
PF00383	PFAM	Cytidine and deoxycytidylate deaminase zinc-binding region	JGI	N/A	IEA
PF01872	PFAM	RibD C-terminal domain	JGI	N/A	IEA
PF08719	PFAM	Domain of unknown function (DUF1768)	JGI	N/A	IEA
RIBOSYN2-PWY	SoyCyc9	flavin biosynthesis I (bacteria and plants)	Plant Metabolic Network		ISS
GN7V-55881	SoyCyc9-rxn	5-amino-6-(5-phosphoribosylamino)uracil reductase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.18g242600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g242600 not represented in the dataset	Glyma.18g242600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g242600

Paralog	Evidence	Comments
Glyma.09g249800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g242600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g47790	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g242600

Limit To All Plant Sequences

>Glyma.18g242600.2 sequence-type=transcript locus=Glyma.18g242600 ID=Glyma.18g242600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATAATTGTTGAAATGATAATAATAAAAAAAAAGCCCAGCATCAACAGCCATCTAGATTGAGGTGTGGTTTTGATCGGTTGCAATTGTGATTTCACTTTAGTAGACCAAACCGAGCCAACAGGATCCAAAGACAGTTTCCTTTCTTATGAGGAAAAACCGAAGCTAAGAAAACAAAACACAAGCGAGTGTTGACAATGGCACTGTCGTGTCTCACACTCACTGCCAACCCTTCTTCCATCATCTGCAAATTCAAAGCGTCCCTACCTACCGCTCCCCACGCCCTCGACGCCACCTACATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGCTTCACATCCCCCCACCCCAACTTCGGCTGCGTCATCGTCTCCCCCTCCGGCAAAGTCGCCGGCGAGGGCTACCTCTACGCCCAGGGCACCGCCGCCGCGGAGGTCCAGGCCGTCAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGTTTGTGTTTTGTAGTTGATAAATGATCCTACCCTGTGTGTGAAACCAAACTAGGGAGGGGTCAAAAGGGTTGTGGTTGGAATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAGTGTCTTCAAAGGGAGGAGTAACAATATTTTGATGTAGAACTACTACCAAAACGGCTTGTTGTGCAACATGTCACAGACAAAAAACCATGTTACCGTGTTGTTAGTTTACTGATCAATCCTTCTATTTTGCTTAAGAGGGACTTTCATTCAAGTCTTCAACTATGTCCAAGTTTGTTTTTATGTGGCGTTTCCCATTttgattatttatttaattaattaattaTACTTTAGGTACTCTTACAGTCTTACAATTGTTATTTCTTGAATTTGATTTCTTCATTCTGTTTTCACGAATTTAATGTCCACTAATTTGGTTCATCTTTAACAAAAATACAATGTGAATATGCAATAGAGTGTTACATTAGCATTTCCGTAAATATTAGATGTCAAATCCCTAAATATTAGATGTTAAATTAATAGATGGATAAAAATTGCATAATTAAAATAGTGGAAAATCAAATTCGTGAAAAAAGTCAAAAGATAACGATAATAGAGAGACCAAGAGTGTAGTTAAGCTTTTTTGTATCAAAGAAAGTGGGGAGTTGATATTGGCTTCTACCACAATTGCTATTGGCCCTACACACCTGAGAAATTACCTGTGAGCCCACTCCTCGTAGTTCCCCTTCCCTGTGAAGCCAACCCATCTCCGTCCCAAATTTGAACCTCCGTATGTGTCATGGTGTTGTGATGTGTAGATCTGTTGGCGTGTCATTTGGCTCGTGCAATGACGGTGGCTTGGGTGATCGTTGGGAGCGGTGATGTGATGGAAGGTGGTGATCTGGTGTTTGGGTGCGCAGGTCTTGGTGGTGTTTTATGATGGTTATGGTTGAAGATGTTGAGTGTTCAAAGGAGGAACAAA

Coding sequences of Glyma.18g242600

Limit To All Plant Sequences

>Glyma.18g242600.1 sequence-type=CDS polypeptide=Glyma.18g242600.1.p locus=Glyma.18g242600 ID=Glyma.18g242600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTGTCGTGTCTCACACTCACTGCCAACCCTTCTTCCATCATCTGCAAATTCAAAGCGTCCCTACCTACCGCTCCCCACGCCCTCGACGCCACCTACATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGCTTCACATCCCCCCACCCCAACTTCGGCTGCGTCATCGTCTCCCCCTCCGGCAAAGTCGCCGGCGAGGGCTACCTCTACGCCCAGGGCACCGCCGCCGCGGAGGTCCAGGCCGTCAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGGGAGGGGTCAAAAGGGTTGTGGTTGGAATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAG

>Glyma.18g242600.2 sequence-type=CDS polypeptide=Glyma.18g242600.2.p locus=Glyma.18g242600 ID=Glyma.18g242600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAG

Predicted protein sequences of Glyma.18g242600

Limit To All Plant Sequences

>Glyma.18g242600.1.p sequence-type=predicted peptide transcript=Glyma.18g242600.1 locus=Glyma.18g242600 ID=Glyma.18g242600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSCLTLTANPSSIICKFKASLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKVAGEGYLYAQGTAAAEVQAVKAAGELCRGATAYLNMEPGDCHGDHSAVSALLQGGVKRVVVGMRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPFSVLKYAMTLDGKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEKANLWDMSEVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNAREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSPDETFVADPTVSPYDSRIIFFYKTWDPYGAFSNFSPHPIQMPDENGDYVTWMSVEHYYQAHKFIGVDDPLAQDCVEMIKSAKSPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMKLRSEFLGESSSSSETPSLTV*

>Glyma.18g242600.2.p sequence-type=predicted peptide transcript=Glyma.18g242600.2 locus=Glyma.18g242600 ID=Glyma.18g242600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPFSVLKYAMTLDGKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEKANLWDMSEVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNAREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSPDETFVADPTVSPYDSRIIFFYKTWDPYGAFSNFSPHPIQMPDENGDYVTWMSVEHYYQAHKFIGVDDPLAQDCVEMIKSAKSPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMKLRSEFLGESSSSSETPSLTV*

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