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Report for Sequence Feature Glyma.18g242600

Feature Type:gene_model
Chromosome:Gm18
Start:53086067
stop:53091337
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g242600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47390.2AT cytidine/deoxycytidylate deaminase family protein JGI N/AIEA
GO:0009231GO-bp riboflavin biosynthetic process EnsemblGenomesN/AIEA
GO:0009231GO-bp riboflavin biosynthetic process JGI N/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0008703GO-mf 5-amino-6-(5-phosphoribosylamino)uracil reductase activity EnsemblGenomesN/AIEA
GO:0008703GO-mf 5-amino-6-(5-phosphoribosylamino)uracil reductase activity JGI N/AIEA
GO:0008835GO-mf diaminohydroxyphosphoribosylaminopyrimidine deaminase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0019239GO-mf deaminase activity EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
KOG1018 KOG Cytosine deaminase FCY1 and related enzymes JGI N/AIEA
PTHR11079Panther CYTOSINE DEAMINASE JGI N/AIEA
PTHR11079:SF14Panther JGI N/AIEA
PF00383PFAM Cytidine and deoxycytidylate deaminase zinc-binding region JGI N/AIEA
PF01872PFAM RibD C-terminal domain JGI N/AIEA
PF08719PFAM Domain of unknown function (DUF1768) JGI N/AIEA
RIBOSYN2-PWYSoyCyc9 flavin biosynthesis I (bacteria and plants) Plant Metabolic Network ISS
GN7V-55881SoyCyc9-rxn 5-amino-6-(5-phosphoribosylamino)uracil reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g242600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g242600
ParalogEvidenceComments
Glyma.09g249800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g242600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g47790 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g242600
>Glyma.18g242600.2 sequence-type=transcript locus=Glyma.18g242600 ID=Glyma.18g242600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATAATTGTTGAAATGATAATAATAAAAAAAAAGCCCAGCATCAACAGCCATCTAGATTGAGGTGTGGTTTTGATCGGTTGCAATTGTGATTTCACTTTAGTAGACCAAACCGAGCCAACAGGATCCAAAGACAGTTTCCTTTCTTATGAGGAAAAACCGAAGCTAAGAAAACAAAACACAAGCGAGTGTTGACAATGGCACTGTCGTGTCTCACACTCACTGCCAACCCTTCTTCCATCATCTGCAAATTCAAAGCGTCCCTACCTACCGCTCCCCACGCCCTCGACGCCACCTACATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGCTTCACATCCCCCCACCCCAACTTCGGCTGCGTCATCGTCTCCCCCTCCGGCAAAGTCGCCGGCGAGGGCTACCTCTACGCCCAGGGCACCGCCGCCGCGGAGGTCCAGGCCGTCAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGTTTGTGTTTTGTAGTTGATAAATGATCCTACCCTGTGTGTGAAACCAAACTAGGGAGGGGTCAAAAGGGTTGTGGTTGGAATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAGTGTCTTCAAAGGGAGGAGTAACAATATTTTGATGTAGAACTACTACCAAAACGGCTTGTTGTGCAACATGTCACAGACAAAAAACCATGTTACCGTGTTGTTAGTTTACTGATCAATCCTTCTATTTTGCTTAAGAGGGACTTTCATTCAAGTCTTCAACTATGTCCAAGTTTGTTTTTATGTGGCGTTTCCCATTttgattatttatttaattaattaattaTACTTTAGGTACTCTTACAGTCTTACAATTGTTATTTCTTGAATTTGATTTCTTCATTCTGTTTTCACGAATTTAATGTCCACTAATTTGGTTCATCTTTAACAAAAATACAATGTGAATATGCAATAGAGTGTTACATTAGCATTTCCGTAAATATTAGATGTCAAATCCCTAAATATTAGATGTTAAATTAATAGATGGATAAAAATTGCATAATTAAAATAGTGGAAAATCAAATTCGTGAAAAAAGTCAAAAGATAACGATAATAGAGAGACCAAGAGTGTAGTTAAGCTTTTTTGTATCAAAGAAAGTGGGGAGTTGATATTGGCTTCTACCACAATTGCTATTGGCCCTACACACCTGAGAAATTACCTGTGAGCCCACTCCTCGTAGTTCCCCTTCCCTGTGAAGCCAACCCATCTCCGTCCCAAATTTGAACCTCCGTATGTGTCATGGTGTTGTGATGTGTAGATCTGTTGGCGTGTCATTTGGCTCGTGCAATGACGGTGGCTTGGGTGATCGTTGGGAGCGGTGATGTGATGGAAGGTGGTGATCTGGTGTTTGGGTGCGCAGGTCTTGGTGGTGTTTTATGATGGTTATGGTTGAAGATGTTGAGTGTTCAAAGGAGGAACAAA
Coding sequences of Glyma.18g242600
>Glyma.18g242600.1 sequence-type=CDS polypeptide=Glyma.18g242600.1.p locus=Glyma.18g242600 ID=Glyma.18g242600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTGTCGTGTCTCACACTCACTGCCAACCCTTCTTCCATCATCTGCAAATTCAAAGCGTCCCTACCTACCGCTCCCCACGCCCTCGACGCCACCTACATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGCTTCACATCCCCCCACCCCAACTTCGGCTGCGTCATCGTCTCCCCCTCCGGCAAAGTCGCCGGCGAGGGCTACCTCTACGCCCAGGGCACCGCCGCCGCGGAGGTCCAGGCCGTCAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGGGAGGGGTCAAAAGGGTTGTGGTTGGAATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAG

>Glyma.18g242600.2 sequence-type=CDS polypeptide=Glyma.18g242600.2.p locus=Glyma.18g242600 ID=Glyma.18g242600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAG
Predicted protein sequences of Glyma.18g242600
>Glyma.18g242600.1.p sequence-type=predicted peptide transcript=Glyma.18g242600.1 locus=Glyma.18g242600 ID=Glyma.18g242600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSCLTLTANPSSIICKFKASLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKVAGEGYLYAQGTAAAEVQAVKAAGELCRGATAYLNMEPGDCHGDHSAVSALLQGGVKRVVVGMRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPFSVLKYAMTLDGKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEKANLWDMSEVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNAREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSPDETFVADPTVSPYDSRIIFFYKTWDPYGAFSNFSPHPIQMPDENGDYVTWMSVEHYYQAHKFIGVDDPLAQDCVEMIKSAKSPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMKLRSEFLGESSSSSETPSLTV*

>Glyma.18g242600.2.p sequence-type=predicted peptide transcript=Glyma.18g242600.2 locus=Glyma.18g242600 ID=Glyma.18g242600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPFSVLKYAMTLDGKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEKANLWDMSEVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNAREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSPDETFVADPTVSPYDSRIIFFYKTWDPYGAFSNFSPHPIQMPDENGDYVTWMSVEHYYQAHKFIGVDDPLAQDCVEMIKSAKSPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMKLRSEFLGESSSSSETPSLTV*






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