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Report for Sequence Feature Glyma.18g240500

Feature Type:gene_model
Chromosome:Gm18
Start:52917757
stop:52920917
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g240500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79790.1AT Haloacid dehalogenase-like hydrolase (HAD) superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG3085 KOG Predicted hydrolase (HAD superfamily) JGI N/AIEA
PTHR12725Panther HALOACID DEHALOGENASE-LIKE HYDROLASE JGI N/AIEA
PTHR12725:SF8Panther JGI N/AIEA
GN7V-67295SoyCyc9-rxn soluble epoxide hydrolase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g240500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g240500
ParalogEvidenceComments
Glyma.09g252100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g240500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g47580 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g240500
>Glyma.18g240500.2 sequence-type=transcript locus=Glyma.18g240500 ID=Glyma.18g240500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAACCAGAGGGAATATTGAAGAGAACAAAGGAAGTGAAAGCAACATGATGCAATGAGTTACAGTGAGATACGAAAATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTTTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACATTCACTTTCATATTCAATCACTAGCATGGCATTGACCAACAACACCACCACCAACGAAAGGAAGCTTCCAATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCTTTTTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTCTGAAGGAGCTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTCATTGATGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGACTCATTTACAATGTGTTTCAGGTAAGAGGAAGCCTGATACTGAATTCTATAAGGAAGTTGTCAGGCATCTTAAAGTTGATCCAACAAATTGTATTTTCGTAGATGACAGGCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGCCATTGATGGGGATTGACATCTCAACAAATGAAGATAGATAGCTTATTTTATTTGATTCTGTTTCTTAACTAAACCAATTTATTTTTATTGGTAGAAAGGGGAAATAACAAACTCATAATTTTACATTCCATTCATGCCAAGCTATTGAACTTGTAGAAGTGACTTCTTATTTTTTACCCTCACAACAATACATATTTATCTTCTTAGCTGTGCTTATAGGAGTGAAAATGAACTAGGTGAGTATACTCATAACTTTAGAGACATGGTGCACCCCTTTGGACCAAGGCAATACTGAATATATATCATGAGGAATATTAACAATACACTTTGACATACTTTCTAAATCCACTTCTATTATT

>Glyma.18g240500.3 sequence-type=transcript locus=Glyma.18g240500 ID=Glyma.18g240500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAAAGCAACATGATGCAATGAGTTACAGTGAGATACGAAAATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTTTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACATTCACTTTCATATTCAATCACTAGCATGGCATTGACCAACAACACCACCACCAACGAAAGGAAGCTTCCAATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCTTTTTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTCTGAAGGAGCTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTCATTGATGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGGCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGCCATTGATGGGGATTGACATCTCAACAAATGAAGATAGATAGCTTATTTTATTTGATTCTGTTTCTTAACTAAACCAATTTATTTTTATTGGTAGAAAGGGGAAATAACAAACTCATAATTTTACATTCCATTCATGCCAAGCTATTGAACTTGTAGAAGTGACTTCTTATTTTTTACCCTCACAACAATACATATTTATCTTCTTAGCTGTGCTTATAGGAGTGAAAATGAACTAGGTGAGTATACTCATAACTTTAGAGACATGGTGCACCCCTTTGGACCAAGGCAATACTGAATATATATCATGA
Coding sequences of Glyma.18g240500
>Glyma.18g240500.1 sequence-type=CDS polypeptide=Glyma.18g240500.1.p locus=Glyma.18g240500 ID=Glyma.18g240500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTTTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACATTCACTTTCATATTCAATCACTAGCATGGCATTGACCAACAACACCACCACCAACGAAAGGAAGCTTCCAATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCTTTTTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTCTGAAGGAGCTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTCATTGATGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGGTAAGAGGAAGCCTGATACTGAATTCTATAAGGAAGTTGTCAGGCATCTTAAAGTTGATCCAACAAATTGTATTTTCGTAGATGACAGGCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGCCATTGATGGGGATTGACATCTCAACAAATGAAGATAGATAG

>Glyma.18g240500.2 sequence-type=CDS polypeptide=Glyma.18g240500.2.p locus=Glyma.18g240500 ID=Glyma.18g240500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTTTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACATTCACTTTCATATTCAATCACTAGCATGGCATTGACCAACAACACCACCACCAACGAAAGGAAGCTTCCAATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCTTTTTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTCTGAAGGAGCTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTCATTGATGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGACTCATTTACAATGTGTTTCAGGTAA

>Glyma.18g240500.3 sequence-type=CDS polypeptide=Glyma.18g240500.3.p locus=Glyma.18g240500 ID=Glyma.18g240500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTTTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACATTCACTTTCATATTCAATCACTAGCATGGCATTGACCAACAACACCACCACCAACGAAAGGAAGCTTCCAATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCTTTTTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTCTGAAGGAGCTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTCATTGATGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGGCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGCCATTGA
Predicted protein sequences of Glyma.18g240500
>Glyma.18g240500.1.p sequence-type=predicted peptide transcript=Glyma.18g240500.1 locus=Glyma.18g240500 ID=Glyma.18g240500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLMGGVGVPSISICFLFQTRPTRHLCLKFRLKHSLSYSITSMALTNNTTTNERKLPILLFDIMDTLVRDPFYQDVPAFFGMSLKELIDCKHPTAWIEFEKGLIDEMELARKFFKDGRDFDLEGLKTCMRSGYSYIEGIEQLLLSLKLNNYEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSWAFGKRKPDTEFYKEVVRHLKVDPTNCIFVDDRQKNVEAAIEVGIRGVHFQNVNSLCEKLPLMGIDISTNEDR*

>Glyma.18g240500.2.p sequence-type=predicted peptide transcript=Glyma.18g240500.2 locus=Glyma.18g240500 ID=Glyma.18g240500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLMGGVGVPSISICFLFQTRPTRHLCLKFRLKHSLSYSITSMALTNNTTTNERKLPILLFDIMDTLVRDPFYQDVPAFFGMSLKELIDCKHPTAWIEFEKGLIDEMELARKFFKDGRDFDLEGLKTCMRSGYSYIEGIEQLLLSLKLNNYEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSWAFDSFTMCFR*

>Glyma.18g240500.3.p sequence-type=predicted peptide transcript=Glyma.18g240500.3 locus=Glyma.18g240500 ID=Glyma.18g240500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLMGGVGVPSISICFLFQTRPTRHLCLKFRLKHSLSYSITSMALTNNTTTNERKLPILLFDIMDTLVRDPFYQDVPAFFGMSLKELIDCKHPTAWIEFEKGLIDEMELARKFFKDGRDFDLEGLKTCMRSGYSYIEGIEQLLLSLKLNNYEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSWAFGKKMWRQQLKLASEGYISRMSIHCVKNCH*






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