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Report for Sequence Feature Glyma.18g240200

Feature Type:gene_model
Chromosome:Gm18
Start:52893955
stop:52902351
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g240200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44370.1AT Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0051205GO-bp protein insertion into membrane EnsemblGenomesN/AIEA
GO:0051205GO-bp protein insertion into membrane JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0042597GO-cc periplasmic space EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0032977GO-mf membrane insertase activity EnsemblGenomesN/AIEA
KOG1239 KOG Inner membrane protein translocase involved in respiratory chain assembly JGI N/AIEA
PTHR12428Panther OXA1 JGI N/AIEA
PTHR12428:SF3Panther JGI N/AIEA
PF02096PFAM 60Kd inner membrane protein JGI N/AIEA

Expression Patterns of Glyma.18g240200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g240200 not represented in the dataset
Glyma.18g240200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g240200
ParalogEvidenceComments
Glyma.09g252500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g240200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g47545 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g240200
>Glyma.18g240200.1 sequence-type=CDS polypeptide=Glyma.18g240200.1.p locus=Glyma.18g240200 ID=Glyma.18g240200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACTGCGGCGGCGCTCTTTTCTCGCCTCCGCCGCGCGCGGCCGTCCTCCTCCCTCTCCCTCCTCTCTCCTCCACGTGTCCTCTCCTCTCCTCTCCCTCCTCCGCTTCCCGCTCCCGCATCACCTCACTCTCCAACCCTCGCCTTTCTCGACGCGTTCCGCTCACGCGCTTTCTCCTCTCACATTTCCGACAATCGAGAACCGGAGCTGAACTCGTTCGGTGTCGACTCACCGCTTAACTCGGAGCTTCTGAAAGTGATTGCTGATACTAGTGGCGGCGGCGAAGACGACGCCGTTTTTCCCGTTCGCGCCGCGATTTCGATGCTCGAGTCGTTTCACGATCTTTCTGGATTTCCGTGGTGGTTAACTATAATTTCATCTACTTTGGCTCTCAGAATTGTTGTTCTTTGTCCTCTGATTTTATCACTTCACAAGCTTAAAACCATTGGAGAGTTTTTTCCTAAATTGCCTCCTCCATTCCCACCGCCTTTCTCAGGAAAGAGTTATATTCGTCAGTTTCTATTCTTCCAGAAGAAGAGAAAAGCAATTGGATGTCCCTCTTATGTGTGGCCGCTGGTACCATTCATTGTACAGGTTCCGTGCTTTTTCTTGTGGATGATTAGCATAAGGAAGATGTCACTGGATGGTCACCCTGGTTTTGATTGTGGCGGTGCTTTATGGTTCCAGAATTTAACAGAACTCTCTCATGGTTATTCAGGGTTCATCTTCCCTTTTCTGATTGCTGGTTTGCACTACGTCACTGTTCAGATATCCTTTAGGAAACCTTTGGTTGCAGAAACACGGGATATTTTTGACTTATTAGCCAAATTTTATAAGCAATACTTGGACTTTCTAACGATACCTATAGCTATCACGGGTTTTTGCATTCCTCAGGGCAGCCAGCTCTATTGGGTTACCAATAGTTCATTAACCCTCATTCAGCAAATAACCCTTAGACATCCTGCTGTCCTTGCAAAGTTGGGGTTACTAGACAATAGTCAAAAGGGAGCTTCTGAGCAAATTGCTGCTTCTAAAACAGCTCCTTCACCAGGGTTACAAGATAATATTCCAACAGCAGCTACCAAGGAAACTGTTTCGCCTGAAAAAAATCCTCTGGATTCACCTGAAAAGTGGCATAGAATACCTATAGAGGAGATGTCCCCTAAAGAACTGGTTACTCTTGCAGTCCCATTTTTAAACAGTGATGATAAAGAAAGTGCAATTCCTTTACTAAAACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGGGACGGGTTCTATTGCTGAAACATGTAAATGATGAAGCTAATGAGTACTTTGAGCGTGCAATATCAAAACTTTCTCTTGCTGGACATTCAGCTGATGCGGAAGAAGTTGATCTTTTGATTCTTTCATCCCAGTGGGCTGGAATTGCCTGCGAACGGCAGGGAAAGAGGGCCGAAGGACGGGCACACTTTGAAAGAGTAGCAAATATGCAGGAGCCAGAAGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCTTGTTGTTGCTTATAAACCTGGTTATAAAAAATTCTTGGAACAGTGTGAAAAAGATGATGATTTTACAAGTGATCTTGCCCGTAGTAGGAGAGACCTCTAA
Predicted protein sequences of Glyma.18g240200
>Glyma.18g240200.1.p sequence-type=predicted peptide transcript=Glyma.18g240200.1 locus=Glyma.18g240200 ID=Glyma.18g240200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATAAALFSRLRRARPSSSLSLLSPPRVLSSPLPPPLPAPASPHSPTLAFLDAFRSRAFSSHISDNREPELNSFGVDSPLNSELLKVIADTSGGGEDDAVFPVRAAISMLESFHDLSGFPWWLTIISSTLALRIVVLCPLILSLHKLKTIGEFFPKLPPPFPPPFSGKSYIRQFLFFQKKRKAIGCPSYVWPLVPFIVQVPCFFLWMISIRKMSLDGHPGFDCGGALWFQNLTELSHGYSGFIFPFLIAGLHYVTVQISFRKPLVAETRDIFDLLAKFYKQYLDFLTIPIAITGFCIPQGSQLYWVTNSSLTLIQQITLRHPAVLAKLGLLDNSQKGASEQIAASKTAPSPGLQDNIPTAATKETVSPEKNPLDSPEKWHRIPIEEMSPKELVTLAVPFLNSDDKESAIPLLKLALDKDPDYVRALVLMGRVLLLKHVNDEANEYFERAISKLSLAGHSADAEEVDLLILSSQWAGIACERQGKRAEGRAHFERVANMQEPEDPTSKGYYFDGLLLLASTLFDAGQKAEAAKYLRLVVAYKPGYKKFLEQCEKDDDFTSDLARSRRDL*






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