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Report for Sequence Feature Glyma.18g234700

Feature Type:gene_model
Chromosome:Gm18
Start:52303944
stop:52315499
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g234700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46020.2AT transcription regulatory protein SNF2, putative JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0040029GO-bp regulation of gene expression, epigenetic EnsemblGenomesN/AIEA
GO:0043044GO-bp ATP-dependent chromatin remodeling EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008094GO-mf DNA-dependent ATPase activity EnsemblGenomesN/AIEA
KOG0386 KOG Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) JGI N/AIEA
PTHR10799Panther SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED JGI N/AIEA
PTHR10799:SF92Panther JGI N/AIEA
PF00176PFAM SNF2 family N-terminal domain JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA
PF08880PFAM QLQ JGI N/AIEA

Expression Patterns of Glyma.18g234700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g234700
ParalogEvidenceComments
Glyma.09g257900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g234700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g234700
>Glyma.18g234700.1 sequence-type=CDS polypeptide=Glyma.18g234700.1.p locus=Glyma.18g234700 ID=Glyma.18g234700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATCTGGCGGAGGTGCCGGTGGTGGGCCCGGCCGGAAACCGGCGGGGCGGGCGCCATCGACGTCATCAGCGGCTGCATCGCCGTCTTCTTCGTCATCCGCGGCCTCACATTTGGAGTCATTGCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAGTGAAGCATTTTTGGCATATCAAGCTGGTCTTCAAGGAGTATTTGGGAGTAACAATTTCCCATCTAGTTCCATGCAGTTACCTCAGCAATCTCGAAAATTTGTTGATTTAGCTCAGCATGGCTCCAACCAGGTTCAAGGTGTTGAGCAGCAAATGCTAAATCCTGTACAAGCAGCATACTTTCAGTATGCTCTGCAGGCTTCGCAACAAAAGTCTGCTTTGGCAATGCAGTCACAGCAGCAACCTAAAGTGGGAATGCTGGGCCCTTCATCTGTAAAGGATCAGGAAATGAGAATGGGAAATTTGAAAATGCAGGATCTTATGTCCATGCAGGCAGTGAATCAGGTCCAAGCATCATCATCTAGAAATTCATCTGAACATTTTACTTGGGGGGAAAAGCGGGTAGAGCAAGGGCAGCAGCTAGCACCTGATCAGAAGAGTGAAGGAAATTCTTCAAGCCAGGGACCAGCTGTTGGAAACTTAATGCCTGGAAATATTATAAGACCTGTGCAAGCTCTGGCAACTCAGCAGAGCATCCCGAACACTATGAACAACCAGATTGCAATGGCTGCTCAGTTGCGGGCTATGCAAGCATGGGCACATGAACGAAATATTGATCTGTCACATCCTGCAAATGCTAACTTAATGGCTCAGCTCATTCCACTGATGCAATCAAGGATAGTTCAACAACCAAAGGCAAACGATACTAACTTAGGTGCAATGTCATCACCTGTCCCTGTTTCAAACCAACAGGTTACTTCTCCGGCAGTCGCAAGTGAGAGTTCAGCACATGCTAATTCATCTAGTGATGTGTCTGCACAATCTGGTTCTGCAAAAGCCAGGCAGACGGCTCCACCCAGCCATTTGAGTCCACCAATTAGTGCTGGTATAGCCAGTAGCTCTAGTGACATGGCAGCACAGCAATTCAGTCTTCATGGCAGAGACGCTCAAGGATCTTTGAAGCAATCAGTTCTAACCATAAATGGAATGCCTTCTGTGCATCCACAGCAGTCCTCTGCAAACATGAACTTAGGTGCAGATCATCCTCTGAATGTAAAAACTTCATCATCTGGTTCAGAACCAGCGAAAATGCAGTACATCAGACAACTAAGCCAATCTACTTCTCAGGCTGGAGGTCTGACAAATGAAGGTGGATCAGGAAATCACCCCAAAACTCAGGGGGGACCATCTCAGATGCCTCAACAACGAAATGGTTTTACCAAACAACAGCTTCATGTTCTTAAGGCACAAATACTAGCATTTAGGCGTCTGAAGAAAGCAGAAGGTGCACTCCCCCAAGAACTTCTTCGGGCCATCATTCCACCACCTCTTGATTTGCAAGTGCAGCAGCCAATTCATTCTGAAGGAGCACAAAATCAGGAGAAATCTGCTGGAAATATTGTGGCAGAACACCCGAGGCAGAATGAGGTCAATGCCAAAGATTCACAGCCTATCTCATCCATTAATGGAAAGAACTCTTCAAAACAGGAAGTCTTTGTCAGAGATGAGAACTCCACTGTAACGGCAGTTCAGGTGCAAGGCACACCTCGTGTGACAAAGGAATCTGCTGGAAAGGAAGAGCAGCAGTCTGTTGCATGCTCTGCTAAGTCAGATCAGGAAAGTGAACATGGAATTGGCAGAACTCCTGTTAGAAATGAGTTAGTATTAGATAAGGGAAAAGCTGTTGCTGCTCCCCAGGCTTCAGTAAATGACGCAATGCAACTCAATAAACCTGCACAAGCAAGTGCTGTTTCCCAGACAAAGGATGTGGGATCCACCAGAAAATATCATGGACCCCTATTTGATTTTCCTTTCTTCACCAGAAAACATGATTCGTTTGGGTCATCAATGATGATCAACAACAATAATTTGTCATTGGCATATGATGTGAAAGAGCTTCTTTTTGAGGAAGGCATAGAGGTCCTTGGCAAGAGAAGGACAGAGAGTTTAAAGAAGATTGAAGGTTTATTGGCGGTAAACTTGGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTGAGGTTGCAAATTGAAGAGAAAAAACTTCGCCTTTTAGATCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATACCGCAAGTTTGTTAGGTTATGTGAACGTCAGCGTATGGAACTTGCTAGACAAGTGCAGGCATCTCAGAGAGCTTTAAGGGAGAAGCAACTGAAATCTATATTTCAATGGCGCAAGAAGCTTCTTGAAACACACTGGGCCATTCGTGATGCCCGTACTGCTCGCAACAGGGGGGTGGCCAAATATCATGAAAGGATGTTGAGAGAGTTCTCAAAACGTAAGGATGATGACCGAAATAAAAGGATGGAAGCCTTAAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATCCAAGGTGATGCTGCAGAGAGATATGCTGTTCTTTCAACTTTCTTAACCCAGACTGAAGAGTATCTCCATAAATTAGGAAGTAAGATAACTGCTGCTAAGAATCAACAGGAAGTGGAAGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCGGCAGCAGCCTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACAATTCATCTGTCAGCAAGTATTACAGCCTTGCTCATGCTGTGAGTGAGAAGGTTGTATGCCAACCATCAATGTTACGGGCAGGAACACTAAGAGACTATCAACTTGTTGGTTTGCAATGGATGCTTTCCTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTAATTGCATACTTGATGGAGTTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTGTATACTTGGCTACCGTCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGATCAAAATTATATTCACAAGAGATTATGGCTATGAAATTTAATGTCCTGGTGACTACTTATGAGTTCATCATGTATGACCGGGCAAGGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGGCGCCTGCTTCTGACAGGAACACCTTTGCAGAATGATTTGAAGGAACTGTGGTCGCTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAATAAGAAAGCCTTTAACGATTGGTTTTCAAAGCCATTTCAAAAGGAAGGTCCCACTCAAAATACAGAGGATGATTGGCTTGAGACTGAGAAAAAAGTTATCATTATCCACCGTCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAGGGTTCACTACCACCAAAGGTCTCTATAGTTTTACGATGTAAGATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCTGAGGGTGAGAACAGTAAGATTCAAAAGAATCCTCATTACCAGGCAAAAGAGTACAAGACTTTAAATAACAGATGTATGGAGCTACGTAAAACTTGCAATCATCCATCTCTGAATTACCCATTACTTGGTGAATTATCTACAAATTCAATTGTAAAATCTTGTGGGAAATTGTGGATCCTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGGGTTTTGCTGTTTAGTACCATGACAAAACTTCTAGACCTCTTGGAAGACTACCTGAATTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAATTTGGATGACCGTGAATCGGCCATAATGGACTTTAATAGCCCTGATTCCGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCCGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGACCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAGAAAAGAGAAGTCAGAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAAGATGAATTGAGAAGTGGAGGCACTGTTGATATGGAGGATGAACTTGTGGGTAAGGATCGCTATATAGGATCCATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGATATGGCCGATGAGGTTATCAATGCTGGACGTTTCGATCAAAGGACAACACATGAAGAGAGGCGTTTGACCTTAGAGACATTGTTACATGATGAAGAACGGTATCAAGAAAATGTCCATGATGTTCCTTCTCTTCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAATTGTTTGATCAAATGGATGAAGAACTGGATTGGCCTGAGGACGTGATGCAACATGATGAGGTTCCTGAGTGGCTCCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTGCTTTATCTAAAAGACCATCAAAGAACACTTTATTGGGTGGTAGTATTGGCATGGAATCCAGTGAGGTGGGTTCTGAAAGGAGAAGGGGACGGCCCAAGGGAAAAAAGCATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAGTATTCTGAAGCAAATTCTGAAGACAGAAATGAAGATTCTGCACAAGAAGGGGAAAATGGAGAGTTTGAAGATGATGGGTATAGTGGGGCTGATGGAAATCGATTGGAAGAGGATGGTCTAACTTCTGATGCTGGATATGAAATTGCCCTTTCTTCAGAAAATGCTAGAAATAATCATGTGGTTGAAGAAGCTGGTTCCTCAGGATCATCCTCCGACAGTCAAAGATTGACAAAGACAGTTTCACCATCAGTTTCTTCCAAAAAATTTGGCTCCCTCTCTGCATTGGATGCCAGGCCAGGCTCCATTTCGAAAATTATGGGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATGGATCATCAACAGTCAGGTAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAGAAACCAAAGATTAAGCGTAAGCGTAGTCTTCGTGTTCGTCCCCGCCATGCCATGGAAAGGCCCGAGGACAAGTCTGGCAGTGAGATGATTTCTCTTCAACGTGGAGAATCATCTGTTTTGGCAGATTATAAATATCAAATTCAAAAAAGGATTGATCCAGAATCAAAATCTTTTGGAGACTCCAATGCCAGCAAGCATGATAAGAATGAAGCATCACTAAAAAATAAGCAAAAGTTACCTTCAAGGAAAATAGCTAATTCATCCAAATTGCATGGATCACCTAAGTCTAATCGTTTGAATTGCACATCTGCTCCTTCAGAGGATGGCAATGAACACCCCACAGAAAGTTGGGAGGGGAAGCATCTCAATCCAAATGGATCTTCAGCTCATGGGACTAAGACAACCGAAATCATCCAGAGAGGATGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGCCATCAAATTGTACCTTTGCTAACAGATTTGTGGAAGAGGATGGAGAATTCTGGGCATGCAGGTGGATCTGGGAACAATCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTATAGCGGAGTAATGGAGCTTGTGTTTGATGTACAGTTCATGTTGAGGGGTGCAATGCATTTCTATGGATACTCATATGAGGTAAGAACTGAAGGAAGGAAGGTCCATGATCTCTTCTTTGATATTTTGAAAATTGCGTTTCCGGATACAGACTTTGGAGAAGCAAGAGGTGCACTATCTTTCTCCAGCCAAGCTCCTGCCGGTACTGCAGCATCCCCAAGGCAAGGGACAGTTGGCCCTAGCAAAAGGCACAGAATGACCAATGATGCGGAAACTGATCCATGCCCTTCACAAAAGCTGTCACAAAGCGGATCAACTTCTAATGGCGAAAATGCCAGGTTCAAAGGTCATTTGCCACAGAAGAACTCAAGAACCGGAAGCAGCAGTGCACGTGAACAACCTCAGCAGGATAACCCTCCACTGCTTGCTCATCCAGGTCAATTGGTTGTGTGCAAGAAGAAAAGAAATGACAGGGACAAATCATTGGGGAAGGGTAGGACTGGATCAACTGGTCCTATTTCTCCACCTAGTGCTATAAGAAGTCCAGGGTCAGGTTCAACCCCAAAGGATGCTAGACTGGCTCAACAGGGAAGGGGTAGCCAGCCATCTCAACACTCAAATGGGTCTGGTGGGTCAGTTGGTTGGGCAAACCCTGTAAAGCGTTTGAGAACAGATTCTGGTAAGAGGAGACCAAGCCATATGTAG
Predicted protein sequences of Glyma.18g234700
>Glyma.18g234700.1.p sequence-type=predicted peptide transcript=Glyma.18g234700.1 locus=Glyma.18g234700 ID=Glyma.18g234700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSGGGAGGGPGRKPAGRAPSTSSAAASPSSSSSAASHLESLQQQQQQQQQQQQIGSRQSFQQQLLRKPEGSEAFLAYQAGLQGVFGSNNFPSSSMQLPQQSRKFVDLAQHGSNQVQGVEQQMLNPVQAAYFQYALQASQQKSALAMQSQQQPKVGMLGPSSVKDQEMRMGNLKMQDLMSMQAVNQVQASSSRNSSEHFTWGEKRVEQGQQLAPDQKSEGNSSSQGPAVGNLMPGNIIRPVQALATQQSIPNTMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMAQLIPLMQSRIVQQPKANDTNLGAMSSPVPVSNQQVTSPAVASESSAHANSSSDVSAQSGSAKARQTAPPSHLSPPISAGIASSSSDMAAQQFSLHGRDAQGSLKQSVLTINGMPSVHPQQSSANMNLGADHPLNVKTSSSGSEPAKMQYIRQLSQSTSQAGGLTNEGGSGNHPKTQGGPSQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSEGAQNQEKSAGNIVAEHPRQNEVNAKDSQPISSINGKNSSKQEVFVRDENSTVTAVQVQGTPRVTKESAGKEEQQSVACSAKSDQESEHGIGRTPVRNELVLDKGKAVAAPQASVNDAMQLNKPAQASAVSQTKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINNNNLSLAYDVKELLFEEGIEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIQGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDNSSVSKYYSLAHAVSEKVVCQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMELRKTCNHPSLNYPLLGELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLEDYLNWRRLVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAALSKRPSKNTLLGGSIGMESSEVGSERRRGRPKGKKHPNYKELEDENGEYSEANSEDRNEDSAQEGENGEFEDDGYSGADGNRLEEDGLTSDAGYEIALSSENARNNHVVEEAGSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDARPGSISKIMGDELEEGEIVVSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHAMERPEDKSGSEMISLQRGESSVLADYKYQIQKRIDPESKSFGDSNASKHDKNEASLKNKQKLPSRKIANSSKLHGSPKSNRLNCTSAPSEDGNEHPTESWEGKHLNPNGSSAHGTKTTEIIQRGCKNVISKLQRRIDKEGHQIVPLLTDLWKRMENSGHAGGSGNNLLDLRKIDQRIDRMDYSGVMELVFDVQFMLRGAMHFYGYSYEVRTEGRKVHDLFFDILKIAFPDTDFGEARGALSFSSQAPAGTAASPRQGTVGPSKRHRMTNDAETDPCPSQKLSQSGSTSNGENARFKGHLPQKNSRTGSSSAREQPQQDNPPLLAHPGQLVVCKKKRNDRDKSLGKGRTGSTGPISPPSAIRSPGSGSTPKDARLAQQGRGSQPSQHSNGSGGSVGWANPVKRLRTDSGKRRPSHM*






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