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Report for Sequence Feature Glyma.18g230900

Feature Type:gene_model
Chromosome:Gm18
Start:51956623
stop:51961267
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g230900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46210.1AT Ribosomal protein S5 domain 2-like superfamily protein JGI N/AIEA
GO:0016075GO-bp rRNA catabolic process EnsemblGenomesN/AIEA
GO:0031125GO-bp rRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0034427GO-bp nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' EnsemblGenomesN/AIEA
GO:0034475GO-bp U4 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0071028GO-bp nuclear mRNA surveillance EnsemblGenomesN/AIEA
GO:0071051GO-bp polyadenylation-dependent snoRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0000176GO-cc nuclear exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0000177GO-cc cytoplasmic exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
KOG1069 KOG Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 JGI N/AIEA
PTHR11953Panther RIBONUCLEASE PH RELATED JGI N/AIEA
PF01138PFAM 3' exoribonuclease family, domain 1 JGI N/AIEA

Expression Patterns of Glyma.18g230900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g230900
ParalogEvidenceComments
Glyma.09g261100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g230900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g230900
>Glyma.18g230900.2 sequence-type=transcript locus=Glyma.18g230900 ID=Glyma.18g230900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATTCTCTGATTTGTCTTGACATTTGCACGTTGCACTCGCTCGCAGCAAAGCTCTCAACTTTACTTTACGATTTCGCTACTTCCAGTTCTAGTAGTCGCAGATTGACAGTGCAGCCTTCCTCTTGTTTCTTCTTTTGAGCAAGTTAAGTTCACTGTTTCAAGTATTTTGGGATCCACAAGGTGGGGACGTAAAGGATTGGGTTTCCGATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGATTTTCCAATCATTTTTGGATGTAGTTTACATATTTGTCTAATTTTTCCCTGCAAGGGCTTGAGAGGAGGGAATTTCTCTACAGGTAGTGCTACATATTTGTCCCATTCATGAAAATATAATTTTTCTTGGTCGATTATAAATTTGCCAAAGCTGGTTTGGTTAGTTCTCAGGAGTACTTCTGAACTTCAGAATACACACA

>Glyma.18g230900.3 sequence-type=transcript locus=Glyma.18g230900 ID=Glyma.18g230900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGCACCGGAGCCTCCCCAGGAGCTTCGCCTCGGTGGCTTCCGGTGCGGCGGTGACAGCGGAGCAGAGCAAAGTTTTATTTTGTGCCAATTTTGTTGCTTCTTTGATTTCTATGCATATACTACGTCTCCTCTCGCTTTTCAGTTTTCCACAGTCATGTGTAGTTTTGAAATATAGTCGCAGATTGACAGTGCAGCCTTCCTCTTGTTTCTTCTTTTGAGCAAGTTAAGTTCACTGTTTCAAGTATTTTGGGATCCACAAGGTGGGGACGTAAAGGATTGGGTTTCCGATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGTAGCGATATGTTGTTCTGTAACAGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGATTTTCCAATCATTTTTGGATGTAGTTTACATATTTGTCTAATTTTTCCCTGCAAGGGCTTGAGAGGAGGGAATTTCTCTACAGGTAGTGCTACATATTTGTCCCATTCATGAAAATATAATTTTTCTTGGTCGATTATAAATTTGCCAAAGCTGGTTTGGTTAGTTCTCAGGAGTACTTCTGAACTTCAGAATACACACA
Coding sequences of Glyma.18g230900
>Glyma.18g230900.1 sequence-type=CDS polypeptide=Glyma.18g230900.1.p locus=Glyma.18g230900 ID=Glyma.18g230900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGTAGCGATATGTTGTTCTGTAACAGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGA

>Glyma.18g230900.2 sequence-type=CDS polypeptide=Glyma.18g230900.2.p locus=Glyma.18g230900 ID=Glyma.18g230900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGA

>Glyma.18g230900.3 sequence-type=CDS polypeptide=Glyma.18g230900.3.p locus=Glyma.18g230900 ID=Glyma.18g230900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGTAGCGATATGTTGTTCTGTAACAGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGA
Predicted protein sequences of Glyma.18g230900
>Glyma.18g230900.1.p sequence-type=predicted peptide transcript=Glyma.18g230900.1 locus=Glyma.18g230900 ID=Glyma.18g230900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFINLVFPNTIVSVLPEGSLQAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIELKSTSEASKAG*

>Glyma.18g230900.2.p sequence-type=predicted peptide transcript=Glyma.18g230900.2 locus=Glyma.18g230900 ID=Glyma.18g230900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLKHLADSGCIILDPTKDEEEKMKAFINLVFPNTIVSVLPEGSLQAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIELKSTSEASKAG*

>Glyma.18g230900.3.p sequence-type=predicted peptide transcript=Glyma.18g230900.3 locus=Glyma.18g230900 ID=Glyma.18g230900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFINLVFPNTIVSVLPEGSLQAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIELKSTSEASKAG*






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