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Report for Sequence Feature Glyma.18g230800

Feature Type:gene_model
Chromosome:Gm18
Start:51950741
stop:51955629
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g230800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G11610.1AT C2 calcium/lipid-binding plant phosphoribosyltransferase family protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1028 KOG Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis JGI N/AIEA
PTHR10024Panther SYNAPTOTAGMIN JGI N/AIEA
PTHR10024:SF97Panther SYNAPTOTAGMIN-7 JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA
PF08372PFAM Plant phosphoribosyltransferase C-terminal JGI N/AIEA

Proteins Associated with Glyma.18g230800
LocusGene SymbolProtein Name
C2-168 C2 domain containing protein gene 168

Expression Patterns of Glyma.18g230800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g230800
ParalogEvidenceComments
Glyma.09g261200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g230800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46500 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g230800
>Glyma.18g230800.1 sequence-type=CDS polypeptide=Glyma.18g230800.1.p locus=Glyma.18g230800 ID=Glyma.18g230800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACAACCTCAAGCTAGGAGTAGAAGTTGCGAGTGCTCATGACCTTGTTCCCAAAGATGGGCAAGGCTCATCTAGTACTTATGTGGAACTCCACTTTGATGGCCAGAGATTTCGGACAACTACTAAAAACAAAGATTTGAGTCCTTTTTGGAATGAGAGCTTTTACTTCACTATTACAGATCCAAGCAAGTTACCAAGTCTCACTCTTGAAGCCTGTATCTACCACTACAACAAAGACAATGGCTCCAATGTACTCCTTGGGAAGGTCCGGCTCACCGGAACCTCATTTGTTTCATATTCTGATGCTGTTCTTTTGCACTACCCTCTGGAAAAGAAAAACATTTTTTCGCGTTCCAAAGGAGAGATTGGTTTGAAGGTTTTTGTTACAGATGACCCTTCTGTAAGAGCCTCAAACCTTCTTCCTGCTGTGGAATCCTTTTTCAATACAGACCAAAATGAAAATCTAACAGAATACCAATCACCGCCACCAGTATCATTTACAAACTCAATCCAAAACAACATGTCTAGAAAGAAAACTGAGCCAAGGCACACGTTTCATAACATTGCAAAATCTAGTAATGAACAAAAACAGCAGTCTAAGCCTGCAGCAGATGCCAAGCCAAGTGTAACCTTTGGGATTCATGAGATGAAATCATCACAGGCTCCTCCAAAAGTTGTTCAAGCATTTGCAGGTCCACAAGAGTTTTCAGTGAAAGAAACAAGCCCTACTCTTGGAGGGGGAAAAGTTGTTGGTGGAAGGGTTATTCGCGGGAGCTTGCCAGCAACATCCAGCAGCTATGACCTTGTTGAACCAATGCAGTACATTTTTGTAAGAGTTGTAAAAGCCCGAGACCTTCCTTCAATGGATATGACAGGTAGCCTTGACCCCTATGTGGAGGTAAAGGTTGGAAACTTCAAAGGAATTACCAATCACTTTGAGAAAAACCAAAATCCTGAATGGAACAAGGTGTTTGCCTTTGCCAAGGACAATCAGCAATCATTTATTCTTGATGTTACGGTCAAAGACAAGGATCGGATATCAGATGATGTTGTTGGAACTGTGAGGTTTTATGATCTGCATGATATTCCTAAACGTATTCCACCTGATAGTCCATTGGCTCCTCAGTGGTATTGGATTGAAAACAAGAATGGAGAAAAGAGAGGGGAGTTGATGCTTGCTGTTTGGAGAGGCACACAAGCTGATGAGGCTTTTCAAGATGCTTGGCATTCTGATGCAGTAGTGTCCCCTGATGGAAGCACTATATCTAACTATGCTCAGATTCGATCGAAAGTTTACATGTCTCCAAGATTATGGTATGTACGCGTCAAAGTGTTGGAGGCACAGGACTTAGTTTCATCTGACAAGTCTAAAGTTCCAGATGTCTATGTTAAGGTACACATTGGCAACCAGATTACAAAGACGAAGCCACTAAGAGCCATGAACCCGCAGTGGAATCATGAAGCGTTGTTTGTTGCTGCTGAACCTTTTGAAGAGCCTTTGGTCTTCACAGTTGAGGAACGCGTTGGTGGCAACAAGGATGAGACTATTGGCAATGTTGTTATTCCTTTAAGCAGAATTGAAAAGCGTGCTGATGATAGGCCTATCCGTGATAACTGGTATCTTCTTGAAAAGTACATGTCATCTGCTATGGAGGAGCAAGCAAAAAAGCAAGAGAAAGAGAAGGAGAAGGACAAGTTCTTCAGCAGAATCCGTGTCATTGCCTTTCTTGATGGTGGATACCATGTGCTAGATGAGTCAACTTATTACAGTAGTGATCTTAGGCCAACCTCAAGGCAGCTATGGAAGAAGCCAATTGGTGTCTTAGAACTTGGCATTTTGAATGCTGATGTATTGCCAGTTCCAACCAAAAATAGGGATGGAAGGGGAACAGCAGATACATACTGTGTGGCAAAGTATGGCCACAAATGGGTGCGCACTAGAACCATTGCTAACAATCTAAACCCAATGTTCCATGAGCAATACACTTGGGAAGTTTATGACATAGCTACAGTTCTCACCCTGGGAGTATTTGATAATGCACAGATTACCAATTCTTCAAATGGTAACAAAGATTCCAAGATTGGAAAGGTTCGGATAAGGATATCAACCCTAGAAGCTGGCCGCGTTTACACTCACTCTTATCCATTGTTATCAGTGCAAAACTCTGGTCTCAAGAAGAATGGTGATGTGCACTTGGCCATACGCTTCTCATACACCTCGATGTTTGACACGATGGCTTTGTATTTCAAACCCCATTTGCCAAAGATGCACTACACAAAGCCCCTTAACATCATGGACCAGGAAAGGCTGAGACTCCAGGCTGTGCTCATTGTTGCATCTAGACTAGGCAGGGCAGAACCCCCTCTTAGAAAGGAAGTGGTTGAGTACATGTCTGACTCAGAATCTCATTTGTGGAGCATGCGGCGCAGCAAGGCCAACTTCAACCGTCTGAAGGAGGTGTTTTCTGGCCTATTTGCATTTGGAATTTGGTTTGGACAAATCGCCAAATGGAAGAACACTTTTGTGACAGTGCTGCTGCACATTCTCTACTTAATGTTTATGTGTTTCCCAGAACTTATTCTACCAACCGTGTTCCTATACGTGTTTGTAATAGGGATGTGGAAATGGAGGTTCCGCCCAAGATACCCTCCTCACATGGATGCTAGTCTCTCTTGTGCACATGTAACAAGCCCTGAGGATTTTGATGAGGAAATGGACACTTTTCCAACCACAAAGAGCATGGATATCGTTCGTTGGAGGTATGATAGGTTGAGAAGTTTGGCAGGGAAGGTTCAGAGTGTTGTTGGACAGATAGCAACTCAGGGAGAAAGATTACATGCTCTTATAAATTGGAGGGATCCGAGAGCCACTTCGATATTCATGGTGTTTTGCCTTGTGACTGCTATAGTTTTGTATGTTACACCACCAAAGATGTTGTTTATTCTATCTGGATTTTACCTAATGAGGCACCCTAAGTTTCGGGGCAAGACACCAGGAGCACCAGTCAATTTCTTCCGTAGGTTGCCTTCTCTCACAGATAGCATGCTGTAA
Predicted protein sequences of Glyma.18g230800
>Glyma.18g230800.1.p sequence-type=predicted peptide transcript=Glyma.18g230800.1 locus=Glyma.18g230800 ID=Glyma.18g230800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNNLKLGVEVASAHDLVPKDGQGSSSTYVELHFDGQRFRTTTKNKDLSPFWNESFYFTITDPSKLPSLTLEACIYHYNKDNGSNVLLGKVRLTGTSFVSYSDAVLLHYPLEKKNIFSRSKGEIGLKVFVTDDPSVRASNLLPAVESFFNTDQNENLTEYQSPPPVSFTNSIQNNMSRKKTEPRHTFHNIAKSSNEQKQQSKPAADAKPSVTFGIHEMKSSQAPPKVVQAFAGPQEFSVKETSPTLGGGKVVGGRVIRGSLPATSSSYDLVEPMQYIFVRVVKARDLPSMDMTGSLDPYVEVKVGNFKGITNHFEKNQNPEWNKVFAFAKDNQQSFILDVTVKDKDRISDDVVGTVRFYDLHDIPKRIPPDSPLAPQWYWIENKNGEKRGELMLAVWRGTQADEAFQDAWHSDAVVSPDGSTISNYAQIRSKVYMSPRLWYVRVKVLEAQDLVSSDKSKVPDVYVKVHIGNQITKTKPLRAMNPQWNHEALFVAAEPFEEPLVFTVEERVGGNKDETIGNVVIPLSRIEKRADDRPIRDNWYLLEKYMSSAMEEQAKKQEKEKEKDKFFSRIRVIAFLDGGYHVLDESTYYSSDLRPTSRQLWKKPIGVLELGILNADVLPVPTKNRDGRGTADTYCVAKYGHKWVRTRTIANNLNPMFHEQYTWEVYDIATVLTLGVFDNAQITNSSNGNKDSKIGKVRIRISTLEAGRVYTHSYPLLSVQNSGLKKNGDVHLAIRFSYTSMFDTMALYFKPHLPKMHYTKPLNIMDQERLRLQAVLIVASRLGRAEPPLRKEVVEYMSDSESHLWSMRRSKANFNRLKEVFSGLFAFGIWFGQIAKWKNTFVTVLLHILYLMFMCFPELILPTVFLYVFVIGMWKWRFRPRYPPHMDASLSCAHVTSPEDFDEEMDTFPTTKSMDIVRWRYDRLRSLAGKVQSVVGQIATQGERLHALINWRDPRATSIFMVFCLVTAIVLYVTPPKMLFILSGFYLMRHPKFRGKTPGAPVNFFRRLPSLTDSML*






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