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Report for Sequence Feature Glyma.18g229300

Feature Type:gene_model
Chromosome:Gm18
Start:51834703
stop:51842867
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g229300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00570.1AT NAD-dependent malic enzyme 2 JGI N/AIEA
GO:0006090GO-bp pyruvate metabolic process EnsemblGenomesN/AIEA
GO:0006108GO-bp malate metabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0004470GO-mf malic enzyme activity EnsemblGenomesN/AIEA
GO:0004471GO-mf malate dehydrogenase (decarboxylating) (NAD+) activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding JGI N/AIEA
KOG1257 KOG NADP+-dependent malic enzyme JGI N/AIEA
PTHR23406Panther MALIC ENZYME-RELATED JGI N/AIEA
PTHR23406:SF2Panther NAD-DEPENDENT MALIC ENZYME, MITOCHONDRIAL JGI N/AIEA
PF00390PFAM Malic enzyme, N-terminal domain JGI N/AIEA
PF03949PFAM Malic enzyme, NAD binding domain JGI N/AIEA
GLUCONEO-PWYSoyCyc9 gluconeogenesis I Plant Metabolic Network ISS
GN7V-51064SoyCyc9-rxn malate dehydrogenase (oxaloacetate-decarboxylating) Plant Metabolic Network ISS

Expression Patterns of Glyma.18g229300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g229300
ParalogEvidenceComments
Glyma.09g262900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g229300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46340 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g229300
>Glyma.18g229300.2 sequence-type=transcript locus=Glyma.18g229300 ID=Glyma.18g229300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATTCACAAAAATACTTTCCTAGCTTTTATTGAAAGTCCAAACATTGCAGGATTAATTCGGATACATTTTTTAAAAATAATTTAATGTCATCATGAATGATTTTTCCGTATAAAATTATGGCTCTGTGGTTTGGTTTATTTGAGGAGCAAGTATGTAACTATGTTACTCGTGTGACATGCATGAAATTGTATGAATGTGGAATCTAAGGATACTGGGTTTCCTTTAACTGAAAGGGATCGATTGGGGCTTCGGGGCCTGCTTCCTCCTCGTGTCATTTCGTTTGAGCATCAATATGATCGGTTTATGAATTCATATAGATCTTTGGAGAAGAATACACAGGGCCAATCAGATAGATTTGTTTCTTTATCCAAATGGAGGATCTTAAATAGATTGCATGACAGGAATGAGACTCTATATTACAGAGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTGTGTGAAAATTATTCCGGGTTATTTAGACGCCCGCGTGGAATGTATTTTAGTGCGAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCATCTGATCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGAGTTCAGGGCATTGGAATACCTATAGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACCCTCAAAAAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTTGAGGATCCCCTTTATTTAGGAGTTCGGCAACCTAGGTTGGAAGGTGAAGAGTATCTATTGATTGTGGATGAATTCATGGAAGCTGTACACGCTCGATGGCCAAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACGGCTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTCAGCATGGCTGTCCAGGCTGTTTCAAGGATGTCAGGGGGCAGTGGAACAGATGCCAACAGTCAATTTTTTTTAATTGATAAAGATGGACTTGTCACGACAGAAAGGAGCAATCTAGATCCAGCTGCAGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTTCAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTTGGATTGTCTGGAGTTGGTGGTGTTTTCAACACTGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCAATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCAGGAGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTGTATACGAGATGTTACAGCAGAGGTTGGGGCTGCTGTTGTATGTGCAGCAGTTGCAGAAAAGCAGGCTGAAGGACATGGTGATGTAGGGTTCAAAGAGCTAGAGAACATGTCAAAAGAAGAAACTGTGGAGTATGTCAGAGGCAATATGTGGTACCCTGAGTATTGCCCTCTTGTTCATGAAAAATGAACTTTTATGAAGGCTTTTTGCTATTGATATCTCAGTTCCGCGCAACCAAGCCCTTTAATATTTTGATTTCTAATCTTAGCAATTTATGACTAGCAAGGTTTTGATAGTTGAAGGTCAATTGGTGAGAAGGGGAGAGAGAGATATCCTCATTTGTTGCAGCCGTGAATTGTATGTGTAATGCCGCCCTCCCTTTCTTTTAGTGTGTGTTTGGATTAGCGTTTGTAGAATTAATTCGAGATCAACATGGTTTTAAGTAAATGTGATTTTAGAATAACGTGATTCGAGAAGCTTCATAAGCATTATAGACAGTTGTTAAGTTCTGTTTCTCTCAAATCATGAAGTGCATTAGGGTTCCTTTCCTTATTAACACCTACAAGCGTGCAATTCATGAATTGCTACATTATTATTTTCGTTAATAATGAATTCTTTCCAAAAATGAATGATAAATTATTTG
Coding sequences of Glyma.18g229300
>Glyma.18g229300.1 sequence-type=CDS polypeptide=Glyma.18g229300.1.p locus=Glyma.18g229300 ID=Glyma.18g229300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAAGGTTGTGCGATTCGCGGCGGCCAGATCGCGGCGGTTCTCGACGGCGATTCCCGGTCCATGCAAGGTTCACAAGCGTGGCACTGATATCCTCCACGACCCTTGGTTCAACAAGGATACTGGGTTTCCTTTAACTGAAAGGGATCGATTGGGGCTTCGGGGCCTGCTTCCTCCTCGTGTCATTTCGTTTGAGCATCAATATGATCGGTTTATGAATTCATATAGATCTTTGGAGAAGAATACACAGGGCCAATCAGATAGATTTGTTTCTTTATCCAAATGGAGGATCTTAAATAGATTGCATGACAGGAATGAGACTCTATATTACAGAGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTGTGTGAAAATTATTCCGGGTTATTTAGACGCCCGCGTGGAATGTATTTTAGTGCGAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCATCTGATCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGAGTTCAGGGCATTGGAATACCTATAGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACCCTCAAAAAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTTGAGGATCCCCTTTATTTAGGAGTTCGGCAACCTAGGTTGGAAGGTGAAGAGTATCTATTGATTGTGGATGAATTCATGGAAGCTGTACACGCTCGATGGCCAAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACGGCTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTCAGCATGGCTGTCCAGGCTGTTTCAAGGATGTCAGGGGGCAGTGGAACAGATGCCAACAGTCAATTTTTTTTAATTGATAAAGATGGACTTGTCACGACAGAAAGGAGCAATCTAGATCCAGCTGCAGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTTCAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTTGGATTGTCTGGAGTTGGTGGTGTTTTCAACACTGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCAATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCAGGAGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTGTATACGAGATGTTACAGCAGAGGTTGGGGCTGCTGTTGTATGTGCAGCAGTTGCAGAAAAGCAGGCTGAAGGACATGGTGATGTAGGGTTCAAAGAGCTAGAGAACATGTCAAAAGAAGAAACTGTGGAGTATGTCAGAGGCAATATGTGGTACCCTGAGTATTGCCCTCTTGTTCATGAAAAATGA

>Glyma.18g229300.2 sequence-type=CDS polypeptide=Glyma.18g229300.2.p locus=Glyma.18g229300 ID=Glyma.18g229300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGTGGAATCTAAGGATACTGGGTTTCCTTTAACTGAAAGGGATCGATTGGGGCTTCGGGGCCTGCTTCCTCCTCGTGTCATTTCGTTTGAGCATCAATATGATCGGTTTATGAATTCATATAGATCTTTGGAGAAGAATACACAGGGCCAATCAGATAGATTTGTTTCTTTATCCAAATGGAGGATCTTAAATAGATTGCATGACAGGAATGAGACTCTATATTACAGAGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTGTGTGAAAATTATTCCGGGTTATTTAGACGCCCGCGTGGAATGTATTTTAGTGCGAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCATCTGATCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGAGTTCAGGGCATTGGAATACCTATAGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACCCTCAAAAAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTTGAGGATCCCCTTTATTTAGGAGTTCGGCAACCTAGGTTGGAAGGTGAAGAGTATCTATTGATTGTGGATGAATTCATGGAAGCTGTACACGCTCGATGGCCAAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACGGCTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTCAGCATGGCTGTCCAGGCTGTTTCAAGGATGTCAGGGGGCAGTGGAACAGATGCCAACAGTCAATTTTTTTTAATTGATAAAGATGGACTTGTCACGACAGAAAGGAGCAATCTAGATCCAGCTGCAGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTTCAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTTGGATTGTCTGGAGTTGGTGGTGTTTTCAACACTGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCAATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCAGGAGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTGTATACGAGATGTTACAGCAGAGGTTGGGGCTGCTGTTGTATGTGCAGCAGTTGCAGAAAAGCAGGCTGAAGGACATGGTGATGTAGGGTTCAAAGAGCTAGAGAACATGTCAAAAGAAGAAACTGTGGAGTATGTCAGAGGCAATATGTGGTACCCTGAGTATTGCCCTCTTGTTCATGAAAAATGA
Predicted protein sequences of Glyma.18g229300
>Glyma.18g229300.1.p sequence-type=predicted peptide transcript=Glyma.18g229300.1 locus=Glyma.18g229300 ID=Glyma.18g229300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWKVVRFAAARSRRFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYDRFMNSYRSLEKNTQGQSDRFVSLSKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDKGEMMSMIYNWPSDQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLEDPLYLGVRQPRLEGEEYLLIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRERFCMFNDDIQGTAGVALAGLLGTVRSQGQPLSDFLKQKIVVVGAGSAGLGVLSMAVQAVSRMSGGSGTDANSQFFLIDKDGLVTTERSNLDPAAVPFAKNPRDLEGLSEGASIIEVVKKVKPHVLLGLSGVGGVFNTEVLKAMRESVSTKPAIFAMSNPTMNAECTAIEAFSHAGENIVFASGSPFENVDLGNGEVGHVNQANNMYLFPGIGLGTLLSGARHITDGMLRAAAECLASYMTEDDVRKGILYPSIDCIRDVTAEVGAAVVCAAVAEKQAEGHGDVGFKELENMSKEETVEYVRGNMWYPEYCPLVHEK*

>Glyma.18g229300.2.p sequence-type=predicted peptide transcript=Glyma.18g229300.2 locus=Glyma.18g229300 ID=Glyma.18g229300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNVESKDTGFPLTERDRLGLRGLLPPRVISFEHQYDRFMNSYRSLEKNTQGQSDRFVSLSKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDKGEMMSMIYNWPSDQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLEDPLYLGVRQPRLEGEEYLLIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRERFCMFNDDIQGTAGVALAGLLGTVRSQGQPLSDFLKQKIVVVGAGSAGLGVLSMAVQAVSRMSGGSGTDANSQFFLIDKDGLVTTERSNLDPAAVPFAKNPRDLEGLSEGASIIEVVKKVKPHVLLGLSGVGGVFNTEVLKAMRESVSTKPAIFAMSNPTMNAECTAIEAFSHAGENIVFASGSPFENVDLGNGEVGHVNQANNMYLFPGIGLGTLLSGARHITDGMLRAAAECLASYMTEDDVRKGILYPSIDCIRDVTAEVGAAVVCAAVAEKQAEGHGDVGFKELENMSKEETVEYVRGNMWYPEYCPLVHEK*






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