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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00550.1 | AT | digalactosyl diacylglycerol deficient 2 | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0009877 | GO-bp | nodulation | EnsemblGenomes | N/A | IEA |
| GO:0019375 | GO-bp | galactolipid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009527 | GO-cc | plastid outer membrane | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0009707 | GO-cc | chloroplast outer membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0043661 | GO-cc | peribacteroid membrane | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0035250 | GO-mf | UDP-galactosyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0046481 | GO-mf | digalactosyldiacylglycerol synthase activity | EnsemblGenomes | N/A | IEA |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | N/A | IEA |
| PTHR12526:SF201 | Panther | JGI | N/A | IEA | |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | N/A | IEA |
| PWY-401 | SoyCyc9 | galactolipid biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-61363 | SoyCyc9-rxn | digalactosyldiacylglycerol synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| DGD2 | digalactosyldiacylglycerol synthase 2 |
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Glyma.18g228900 not represented in the dataset |
Glyma.18g228900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g263300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g46300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g228900.1 sequence-type=CDS polypeptide=Glyma.18g228900.1.p locus=Glyma.18g228900 ID=Glyma.18g228900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACAAGAAAGAGCATATTGCAATTTTTACTACTGCTAGCCTTCCATGGTTGACAGGAACCGCTGTGAACCCTTTGTTTCGTGCCGCGTATCTCGCCAAAAGTGGGGAAAGAGATGTCACTTTGGTGATCCCTTGGTTATCTCTGAAAGATCAAAGACTTGTATATCCCAACAACATTACATTTGCTTCACCCTCAGAGCATGAGAAGTATATCTGCCAGTGGCTAGAGGAGAGAGTTGGATTTACATCTGGTTTCAGCATACAGTTTTATCCAGGAAAGTTTTCTAGAGATAAAAGGAGCATTCTTGCTGTTGGGGATATTTCAGAGATTATCCCTGACAAAGTTGCAGATATTGCTGTTCTAGAGGAGCCTGAGCACTTGACTTGGTATCACCATGGGAAAAGATGGAAGACTAAATTCAGACTAGTTATAGGGATAATTCATACGAATTATTTGGAGTATGTGAAGAGAGAGAAGAATGGAGTCATGCAAGCATTTTTGCTGAAATATTTAAACAACTGGGTTGTTAGTATATATTGTCACAAGGTAATTAGATTATCTGCCGCCACCCAGGATTACACTGGCTCCATCATCTGTAATGTTCATGGAGTTAATCCGAAATTCCTTGAGATTGGCAAGAAAAAGAGGGAACAACAACAGAAGGGAGAACATGCCTTTACCAAAGGTGCCTACTTTATTGGGAAGATGATATGGAGCAAAGGCTACAAGGAACTGCTCCAACTTCTTAAAGATCATGAAAAGGAATTATCTGCTCTTGAGGTTGATTTATTTGGCAGTGGAGAGGACTCAGATGAAGTTCAAAAAGCTGCAGAAAAGTTGGAACTAGCAGTTAGAGTCCACCCAGCTCGTGATCATGCTGATGCTCTATTTCATGATTACAAATTGTTTCTTAATCCAAGCACAACAGATGTGGTCTGCACAACAACAGCAGAAGCTTTAGCAATGGGCAAAATTGTTGTTTGTGCCAACCATCCCTCAAATGACTTTTTCAAGCAGTTCCCAAATTGTTGGACGTACGACGACGATGACGGATTTGTTAAACTCACACTCAAGGCACTGGCTGAACAACCTGCCCAGCCTACTGATGCTCAGAGACATGACCTATCTTGGGAGGCCGCCACAAAACGGTTTCTTAAGGCAGCTGACTTAGACAAGCCGTTAGAGAGAAAATTGTCAAGAACAACTTCAAACTTTCTGGCTGCCTCCTTAAATTTGCAAGAGAAAGTAGATGAAGCATCAGCATATGTGCATCATGTAGCTTCTGGGTTTGAAGTATCAAGAAGAATCTTTGGTGCCATTCCAGATAGCTTGCAGCCAGATGAAGAGCTACGCAAGGAGCTTGGGTTGACTGATGCTTCCACGAAATAA
>Glyma.18g228900.1.p sequence-type=predicted peptide transcript=Glyma.18g228900.1 locus=Glyma.18g228900 ID=Glyma.18g228900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDKKEHIAIFTTASLPWLTGTAVNPLFRAAYLAKSGERDVTLVIPWLSLKDQRLVYPNNITFASPSEHEKYICQWLEERVGFTSGFSIQFYPGKFSRDKRSILAVGDISEIIPDKVADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGVMQAFLLKYLNNWVVSIYCHKVIRLSAATQDYTGSIICNVHGVNPKFLEIGKKKREQQQKGEHAFTKGAYFIGKMIWSKGYKELLQLLKDHEKELSALEVDLFGSGEDSDEVQKAAEKLELAVRVHPARDHADALFHDYKLFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCWTYDDDDGFVKLTLKALAEQPAQPTDAQRHDLSWEAATKRFLKAADLDKPLERKLSRTTSNFLAASLNLQEKVDEASAYVHHVASGFEVSRRIFGAIPDSLQPDEELRKELGLTDASTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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