SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g228000

Feature Type:gene_model
Chromosome:Gm18
Start:51988029
stop:51992788
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.18g228000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01880.1AT JGI N/AIEA
3.1.16.1EC spleen exonuclease JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0004518GO-mf nuclease activity JGI N/AIEA
K15338KEGG DNA repair and recombination proteins JGI N/AIEA
KOG2519 KOG 5'-3' exonuclease JGI N/AIEA
PTHR11081PantherFam FLAP ENDONUCLEASE FAMILY MEMBER JGI N/AIEA
PF00752Pfam XPG N-terminal domain JGI N/AIEA
PF00867Pfam XPG I-region JGI N/AIEA

Gene model name correspondences to Glyma.18g228000 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g228000
>Glyma.18g228000.1 sequence-type=CDS polypeptide=Glyma.18g228000.1.p locus=Glyma.18g228000 id=Glyma.18g228000.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTAAAGCCCTATGCGCGCAAAGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCACGAGAATGCCATCAAGGCCACGCATGTCAGAAACCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGCTAGCTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCACATGTTTTCAAGTCATGTTCAAAAATGTGTGGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAATCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGAACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATAAAGGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCGTTTTGTTAAGGCTTTTAGTGAAGAAGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATACTTCACAAATTCCCATCTTCATTAAATTTGAGGATGATATGGATATGGATGGGAACTCCCTAAATAGAAAACAATCTCACTGTTCACTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATTTTGTGTCACAAAGGCTGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTGAAAAATTGGCACACAAAAATTTGTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGAATGAAATCATTGATATGTATTTGTGCAATGACAATGCAAGTGATGGCCCACACATTGTATGGGGAAAACCGAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCAGCTTACGTTCGACGGATGATGTTTCCTATGATGTCAACCATCTTTTTGAGAGATATGACAACAACTACAGAAGAGACTATGTTATTTGGGCAATATCAGTTTGATTCCATAGAACGTGTCAAGATGAGATATGGATACCAATTTTTTGTGGTCAAGTGGAAACATGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGCTATAATAGAGCTTGATGAAACGGTGGATCTACTGGATGACTGTGATGTTCCAGAGATTCATGAAGACAGTGGGTGTCGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGACCAGGAACTGAAAAGAAGAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCACCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGGAGGAGAGTCATCCAAGATTGCTGATAGTCAAGGCAATGAGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAG
Predicted protein sequences of Glyma.18g228000
>Glyma.18g228000.1.p sequence-type=predicted peptide transcript=Glyma.18g228000.1 locus=Glyma.18g228000 id=Glyma.18g228000.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQHENAIKATHVRNPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKSRARIVRYFRSSGIELASLPVPEEGVSAERNHMFSSHVQKCVELVELLGMPVLKAKGEAESLCAQLNSEGHVDACITADSDAFLFGANCIIKCFCPNFKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDIKGVRGIGLDTALRFVKAFSEEDILNRLHEIGKGNTSQIPIFIKFEDDMDMDGNSLNRKQSHCSLCGHPGSKKDHMKFPCEFCVTKADEGCQRKPEDFKCDCFSCDMNRKHKEKKRLKNWHTKICHKIAEEPNFPKNEIIDMYLCNDNASDGPHIVWGKPNIEMLIDFLNFHQHWEPAYVRRMMFPMMSTIFLRDMTTTTEETMLFGQYQFDSIERVKMRYGYQFFVVKWKHAGVNISCKVPLKESSVQQDAIIELDETVDLLDDCDVPEIHEDSGCRFLLTDENMDLVGAAFPAEVKRFWQDQELKRRKNSTSRSQENEKSPSPNSRSIQLNITEFYPSTKVKHRQSKQGGGESSKIADSQGNEGSKMKRKMSSPDKIPKSVRRRLLFD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo