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Report for Sequence Feature Glyma.18g228000

Feature Type:gene_model
Chromosome:Gm18
Start:51707111
stop:51711819
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g228000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01880.1AT 5'-3' exonuclease family protein JGI N/AIEA
AT1G01880.2AT 5'-3' exonuclease family protein JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0004518GO-mf nuclease activity EnsemblGenomesN/AIEA
GO:0004518GO-mf nuclease activity JGI N/AIEA
PTHR11081Panther XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY JGI N/AIEA
PTHR11081:SF23Panther FLAP ENDONUCLEASE GEN HOMOLOG 1 JGI N/AIEA
PF00752PFAM XPG N-terminal domain JGI N/AIEA
PF00867PFAM XPG I-region JGI N/AIEA

Expression Patterns of Glyma.18g228000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g228000
ParalogEvidenceComments
Glyma.09g264000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g228000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g228000
>Glyma.18g228000.2 sequence-type=transcript locus=Glyma.18g228000 ID=Glyma.18g228000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTTCCAAACACCAAAACCTAGAACAACTCTTTCAGTCCACTGCGTTTCAGAAGAAGAAAAAGATTAAAATTTGACAATGTATTTTAGTACCCTCTTTCGTGATTAAGCAGAAGAAACCAAATGGGGGTTGGTGGTAATTTCTGGGACCTGCTAAAGCCCTATGCGCGCAAAGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCACGAGAATGCCATCAAGGCCACGCATGTCAGAAACCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGCTAGCTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCACATGTTTTCAAGTCATGTTCAAAAATGTGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAATCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGAACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATAAAGGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCGTTTTGTTAAGGCTTTTAGTGAAGAAGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATACTTCACAAATTCCCATCTTCATTAAATTTGAGGATGATATGGATATGGATGGGAACTCCCTAAATAGAAAACAATCTCACTGTTCACTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATTTTGTGTCACAAAGGCTGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTGAAAAATTGGCACACAAAAATTTGTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGAATGAAATCATTGATATGTATTTGTGCAATGACAATGCAAGTGATGGCCCACACATTGTATGGGGAAAACCGAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCAGCTTACGTTCGACGGATGATGTTTCCTATGATGTCAACCATCTTTTTGAGAGATATGACAACAACTACAGAAGAGACTATGTTATTTGGGCAATATCAGTTTGATTCCATAGAACGTGTCAAGATGAGATATGGATACCAATTTTTTGTGGTCAAGTGGAAACATGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGCTATAATAGAGCTTGATGAAACGGTGGATCTACTGGATGACTGTGATGTTCCAGAGATTCATGAAGACAGTGGGTGTCGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGACCAGGAACTGAAAAGAAGAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCACCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGGAGGAGAGTCATCCAAGATTGCTGATAGTCAAGGCAATGAGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAGTATGTATATATGCTTGAGTTATGATATCTACTGACTTAGTGACTATAGAGTTGTATTGACCTTATAATTTTGTTACGGTTGAATACAGGTCAGTGAGTatatatttaacataatataagtttgcagtcgtatatatttaacataatatagtttagtataTAGTTTTCTTTTTTTCGAATTTCTAGATTTTTGAGTTATCCAACTGATGAATATGT
Coding sequences of Glyma.18g228000
>Glyma.18g228000.1 sequence-type=CDS polypeptide=Glyma.18g228000.1.p locus=Glyma.18g228000 ID=Glyma.18g228000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTAAAGCCCTATGCGCGCAAAGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCACGAGAATGCCATCAAGGCCACGCATGTCAGAAACCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGCTAGCTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCACATGTTTTCAAGTCATGTTCAAAAATGTGTGGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAATCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGAACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATAAAGGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCGTTTTGTTAAGGCTTTTAGTGAAGAAGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATACTTCACAAATTCCCATCTTCATTAAATTTGAGGATGATATGGATATGGATGGGAACTCCCTAAATAGAAAACAATCTCACTGTTCACTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATTTTGTGTCACAAAGGCTGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTGAAAAATTGGCACACAAAAATTTGTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGAATGAAATCATTGATATGTATTTGTGCAATGACAATGCAAGTGATGGCCCACACATTGTATGGGGAAAACCGAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCAGCTTACGTTCGACGGATGATGTTTCCTATGATGTCAACCATCTTTTTGAGAGATATGACAACAACTACAGAAGAGACTATGTTATTTGGGCAATATCAGTTTGATTCCATAGAACGTGTCAAGATGAGATATGGATACCAATTTTTTGTGGTCAAGTGGAAACATGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGCTATAATAGAGCTTGATGAAACGGTGGATCTACTGGATGACTGTGATGTTCCAGAGATTCATGAAGACAGTGGGTGTCGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGACCAGGAACTGAAAAGAAGAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCACCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGGAGGAGAGTCATCCAAGATTGCTGATAGTCAAGGCAATGAGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAG

>Glyma.18g228000.2 sequence-type=CDS polypeptide=Glyma.18g228000.2.p locus=Glyma.18g228000 ID=Glyma.18g228000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTAAAGCCCTATGCGCGCAAAGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCACGAGAATGCCATCAAGGCCACGCATGTCAGAAACCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGCTAGCTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCACATGTTTTCAAGTCATGTTCAAAAATGTGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAATCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGAACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATAAAGGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCGTTTTGTTAAGGCTTTTAGTGAAGAAGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATACTTCACAAATTCCCATCTTCATTAAATTTGAGGATGATATGGATATGGATGGGAACTCCCTAAATAGAAAACAATCTCACTGTTCACTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATTTTGTGTCACAAAGGCTGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTGAAAAATTGGCACACAAAAATTTGTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGAATGAAATCATTGATATGTATTTGTGCAATGACAATGCAAGTGATGGCCCACACATTGTATGGGGAAAACCGAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCAGCTTACGTTCGACGGATGATGTTTCCTATGATGTCAACCATCTTTTTGAGAGATATGACAACAACTACAGAAGAGACTATGTTATTTGGGCAATATCAGTTTGATTCCATAGAACGTGTCAAGATGAGATATGGATACCAATTTTTTGTGGTCAAGTGGAAACATGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGCTATAATAGAGCTTGATGAAACGGTGGATCTACTGGATGACTGTGATGTTCCAGAGATTCATGAAGACAGTGGGTGTCGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGACCAGGAACTGAAAAGAAGAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCACCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGGAGGAGAGTCATCCAAGATTGCTGATAGTCAAGGCAATGAGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAG
Predicted protein sequences of Glyma.18g228000
>Glyma.18g228000.1.p sequence-type=predicted peptide transcript=Glyma.18g228000.1 locus=Glyma.18g228000 ID=Glyma.18g228000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQHENAIKATHVRNPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKSRARIVRYFRSSGIELASLPVPEEGVSAERNHMFSSHVQKCVELVELLGMPVLKAKGEAESLCAQLNSEGHVDACITADSDAFLFGANCIIKCFCPNFKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDIKGVRGIGLDTALRFVKAFSEEDILNRLHEIGKGNTSQIPIFIKFEDDMDMDGNSLNRKQSHCSLCGHPGSKKDHMKFPCEFCVTKADEGCQRKPEDFKCDCFSCDMNRKHKEKKRLKNWHTKICHKIAEEPNFPKNEIIDMYLCNDNASDGPHIVWGKPNIEMLIDFLNFHQHWEPAYVRRMMFPMMSTIFLRDMTTTTEETMLFGQYQFDSIERVKMRYGYQFFVVKWKHAGVNISCKVPLKESSVQQDAIIELDETVDLLDDCDVPEIHEDSGCRFLLTDENMDLVGAAFPAEVKRFWQDQELKRRKNSTSRSQENEKSPSPNSRSIQLNITEFYPSTKVKHRQSKQGGGESSKIADSQGNEGSKMKRKMSSPDKIPKSVRRRLLFD*

>Glyma.18g228000.2.p sequence-type=predicted peptide transcript=Glyma.18g228000.2 locus=Glyma.18g228000 ID=Glyma.18g228000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQHENAIKATHVRNPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKSRARIVRYFRSSGIELASLPVPEEGVSAERNHMFSSHVQKCELVELLGMPVLKAKGEAESLCAQLNSEGHVDACITADSDAFLFGANCIIKCFCPNFKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDIKGVRGIGLDTALRFVKAFSEEDILNRLHEIGKGNTSQIPIFIKFEDDMDMDGNSLNRKQSHCSLCGHPGSKKDHMKFPCEFCVTKADEGCQRKPEDFKCDCFSCDMNRKHKEKKRLKNWHTKICHKIAEEPNFPKNEIIDMYLCNDNASDGPHIVWGKPNIEMLIDFLNFHQHWEPAYVRRMMFPMMSTIFLRDMTTTTEETMLFGQYQFDSIERVKMRYGYQFFVVKWKHAGVNISCKVPLKESSVQQDAIIELDETVDLLDDCDVPEIHEDSGCRFLLTDENMDLVGAAFPAEVKRFWQDQELKRRKNSTSRSQENEKSPSPNSRSIQLNITEFYPSTKVKHRQSKQGGGESSKIADSQGNEGSKMKRKMSSPDKIPKSVRRRLLFD*






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