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Report for Sequence Feature Glyma.18g227900

Feature Type:gene_model
Chromosome:Gm18
Start:51700817
stop:51705989
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g227900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01860.1AT Ribosomal RNA adenine dimethylase family protein JGI N/AIEA
GO:0000154GO-bp rRNA modification EnsemblGenomesN/AIEA
GO:0000154GO-bp rRNA modification JGI N/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0031167GO-bp rRNA methylation EnsemblGenomesN/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000179GO-mf rRNA (adenine-N6,N6-)-dimethyltransferase activity EnsemblGenomesN/AIEA
GO:0000179GO-mf rRNA (adenine-N6,N6-)-dimethyltransferase activity JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008649GO-mf rRNA methyltransferase activity EnsemblGenomesN/AIEA
GO:0008649GO-mf rRNA methyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0820 KOG Ribosomal RNA adenine dimethylase JGI N/AIEA
PTHR11727Panther DIMETHYLADENOSINE TRANSFERASE JGI N/AIEA
PTHR11727:SF7Panther DIMETHYLADENOSINE TRANSFERASE-RELATED JGI N/AIEA
PF00398PFAM Ribosomal RNA adenine dimethylase JGI N/AIEA

Expression Patterns of Glyma.18g227900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g227900 not represented in the dataset
Glyma.18g227900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g227900
ParalogEvidenceComments
Glyma.09g264100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g227900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g227900
>Glyma.18g227900.1 sequence-type=CDS polypeptide=Glyma.18g227900.1.p locus=Glyma.18g227900 ID=Glyma.18g227900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCCTTCATCATTGTGCTCTCTTCAAACGTTCCCGCCAATATCTCACGCATTGCTTAACCGCCACCACAAACCGGCGCACGATAGCACCGCCGGCGTACGGAGAAGAACGCCTTACGTAGTTTGCGCTGAAAAAGGCAGCAGAGCTTCGACGCGAAGCGCAGATGATTACCACGCCACTCTCAAAGCTCTCAACTCCAAAGGCAGATTCCCAAGAAAATCACTTGGCCAGCATTATATGTTGAATGCTGACATAAATGACCAACTTGCCGGTGCGGCTGGTGTTGAACAAGGTGATGTGGTGTTGGAAATTGGGCCTGGAACTGGTTCCTTGACTAATGTTCTTTTAAATTCGGGAGCATTTGTTCTTGCAGTTGAGAAGGATAAACACATGGCTGCCCTTGTGAGTGAAAGATTTTCAAGTACAGGAAAGTTAAAGGTTTTGACAGAGGATATTGTCAAATGTCATGTGCGCTCTCATATGTCATCATTGGTTGGAAGCATAAACCCAGAATCTAGAAAAGCAAAAGTGGTTGCCAACATTCCCTTTAATATCAGTACAGATGTGATCAAACTACTTCTACCAATGGGTGACATTTTCTCAGAAGTGGTTCTGTTGCTCCAGGAGGAGACTGCTGTGCGCTTGGTAGTGTCATCACTCCGGACCCCTGAGTATCGTCCCATCAATGTATTTGTTAATTTCTACTCAGATCCAGAGTACAAACTTGAAGTCCCAAGAACCAATTTTTTCCCTCAGCCTAATGTTGATGCAGCTGTTGTCTCATTCAAGCTGAAGCTACCCTCAGAATACCCCCAAGTTTCTTCCACTAAAAGCTTCTTCTCAATGGTTAATTCAGCATTCAATGAGAAGCGTAAGATGCTGCGCAAGTCACTTCAGCACATATGCACATCACTTGAGATCGAAGAAGCTTTAACTAGCATAGGTCTTCTAGCCACTTCAAGGCCAGAGGAACTAACATTGGATGATTTTGTAAAGTTGCATAACTTGATTGCCAAGGAGTAG
Predicted protein sequences of Glyma.18g227900
>Glyma.18g227900.1.p sequence-type=predicted peptide transcript=Glyma.18g227900.1 locus=Glyma.18g227900 ID=Glyma.18g227900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSPSSLCSLQTFPPISHALLNRHHKPAHDSTAGVRRRTPYVVCAEKGSRASTRSADDYHATLKALNSKGRFPRKSLGQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALVSERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPINVFVNFYSDPEYKLEVPRTNFFPQPNVDAAVVSFKLKLPSEYPQVSSTKSFFSMVNSAFNEKRKMLRKSLQHICTSLEIEEALTSIGLLATSRPEELTLDDFVKLHNLIAKE*






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