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Report for Sequence Feature Glyma.18g226000

Feature Type:gene_model
Chromosome:Gm18
Start:51442320
stop:51442559
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g226000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44330.1AT RING/U-box superfamily protein JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI N/AIEA
PTHR22766Panther RING FINGER PROTEIN 24-RELATED JGI N/AIEA
PTHR22766:SF21Panther JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA

Expression Patterns of Glyma.18g226000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g226000 not represented in the dataset
Glyma.18g226000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g226000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g46001 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g226000
>Glyma.18g226000.1 sequence-type=CDS polypeptide=Glyma.18g226000.1.p locus=Glyma.18g226000 ID=Glyma.18g226000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTGTGATGGAGGTGAGCATTTGTCTTTGCCTGCGGGGGCAACGACACTCGAAAGATTTATGGTTGAAGATGAACAGGAGGATCCATGTGCCATATGCATCAAGGATTTCAACTCTGGTGATAATGCAGCAAGGTTGCCTTGCTCTCATGTCTTCCACCCTGATTGTATTTTGCAATGGTTTGTTCAGAAGAGTACGTGCCCTTTGTGCTGTTTCGCTTGTAGTCGTGTCTCTTGA
Predicted protein sequences of Glyma.18g226000
>Glyma.18g226000.1.p sequence-type=predicted peptide transcript=Glyma.18g226000.1 locus=Glyma.18g226000 ID=Glyma.18g226000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MACDGGEHLSLPAGATTLERFMVEDEQEDPCAICIKDFNSGDNAARLPCSHVFHPDCILQWFVQKSTCPLCCFACSRVS*






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