Glyma.18g221700

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Report for Sequence Feature Glyma.18g221700

Feature Type:	gene_model
Chromosome:	Gm18
Start:	50883100
stop:	50886470
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g221700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45440.1	AT	dihydrodipicolinate synthase	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	JGI	N/A	IEA
GO:0008652	GO-bp	cellular amino acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009085	GO-bp	lysine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009089	GO-bp	lysine biosynthetic process via diaminopimelate	EnsemblGenomes	N/A	IEA
GO:0019877	GO-bp	diaminopimelate biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008840	GO-mf	4-hydroxy-tetrahydrodipicolinate synthase	EnsemblGenomes	N/A	IEA
GO:0016829	GO-mf	lyase activity	EnsemblGenomes	N/A	IEA
GO:0016829	GO-mf	lyase activity	JGI	N/A	IEA
PTHR12128	Panther	DIHYDRODIPICOLINATE SYNTHASE	JGI	N/A	IEA
PF00701	PFAM	Dihydrodipicolinate synthetase family	JGI	N/A	IEA
PWY-5097	SoyCyc9	L-lysine biosynthesis VI	Plant Metabolic Network		ISS
PWY-724	SoyCyc9	superpathway of L-lysine, L-threonine and L-methionine biosynthesis II	Plant Metabolic Network		ISS
GN7V-58264	SoyCyc9-rxn	Enzyme name not determined	Plant Metabolic Network		ISS

Proteins Associated with Glyma.18g221700

Locus	Gene Symbol	Protein Name
	DHPS1	dihydrodipicolinate synthase

Expression Patterns of Glyma.18g221700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g221700

Paralog	Evidence	Comments
Glyma.09g268200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g221700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g45380	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.18g221700

Limit To All Plant Sequences

>Glyma.18g221700.1 sequence-type=CDS polypeptide=Glyma.18g221700.1.p locus=Glyma.18g221700 ID=Glyma.18g221700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACACTCAAGAGCGTCTGCTTCAGAGGATCCACCTTTCCCGTTTGCCCCTCCAATTTCACGAACACTAGAAACACCAGGAGCTCATGTTGGAGGCCTACACAAGCAGCTGTGAAGTCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGTTTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGCTGAAGGTGTTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCATACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACTGAGCAGGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGACCCACAATAATCTACAATGTGCCTGCACGGACCGGTCAAGACATTCCTCCGCATGTAATTCAAACCTTAGCTGAAAGTGTTAACCTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGAATCAAACAGTATACAGATGATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGTCATGATGCTAGATGGGGTTATGGGGCTACCGGAGTGGTATCTGTTGCGAGCAACCTGGTTCCCGGTTTAATGCGAGAACTCATGTTTGGCGGTGTAAACCCTACTCTAAATTCTAAACTCTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGGGTCATCAGACCCGTTTTTAGGCTACCTTTTGTACCTCTCCCTGTGGACAAAAGGATAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGTTGTTGAGGTTCTTGATGATGATGACTTTTTCTTGGTTAGTCGTTATTAA

Predicted protein sequences of Glyma.18g221700

Limit To All Plant Sequences

>Glyma.18g221700.1.p sequence-type=predicted peptide transcript=Glyma.18g221700.1 locus=Glyma.18g221700 ID=Glyma.18g221700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATLKSVCFRGSTFPVCPSNFTNTRNTRSSCWRPTQAAVKSNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESVNLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVVSVASNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVIRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKVVEVLDDDDFFLVSRY*

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