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Report for Sequence Feature Glyma.18g220200

Feature Type:gene_model
Chromosome:Gm18
Start:50714270
stop:50723555
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g220200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38650.1AT galacturonosyltransferase 7 JGI N/AIEA
GO:0045489GO-bp pectin biosynthetic process EnsemblGenomesN/AIEA
GO:0071555GO-bp cell wall organization EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups JGI N/AIEA
GO:0047262GO-mf polygalacturonate 4-alpha-galacturonosyltransferase activity EnsemblGenomesN/AIEA
PTHR13778Panther GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN JGI N/AIEA
PTHR13778:SF2Panther GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 2 JGI N/AIEA
PF01501PFAM Glycosyl transferase family 8 JGI N/AIEA
PWY-1061SoyCyc9 homogalacturonan biosynthesis Plant Metabolic Network ISS
GN7V-51201SoyCyc9-rxn polygalacturonate 4-α-galacturonosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g220200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g220200 not represented in the dataset
Glyma.18g220200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g220200
ParalogEvidenceComments
Glyma.09g269900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g220200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g45226 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g220200
>Glyma.18g220200.1 sequence-type=CDS polypeptide=Glyma.18g220200.1.p locus=Glyma.18g220200 ID=Glyma.18g220200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAGCGGTGGTGGTGGTGGTGGTGGTATGGGCGCGGTTCCGTCGTACGGCGTCCCCGCGAAACGGCGGTGGAGAGGGCTCGTAATTGCGGTGCTCGGTCTTGTCATTCTCTCCATGCTCGTCCCTCTCGTCTTCTTGCTCGGTCTCCACAATGGTTTCCACTCCTCCGGATATATATATGAACAGAAGAATACTCCTTCGAATGAGAAAAGTCTTGAAAGATATGATAGACATGATGTTGGCCATAATGAGTCTGAGGGAGAACAATCAAGTCATGTGGAGGATCTTATCACAAAGTTTGAACCAACTCTTCCAAAGGATGTTCTGAAGAAATACACTCGAGAAGGCAAGAGTGATAAACAAAGAGGTTCTAGGGCGCCACCTAAGGGTGTTCTGCAATCACCTCCAACTTCAAATAGTCCTAGAAGTGGTCAAATTGAACAAGTCAACAACCCTAAAACAAGCTCTACCGATGAAGGTGGAAAGTCATGTGAGCTAACATTTGGAAGTTATTGCCTTTGGCAACAAGAACATAGACAAGAAATGAAAGATGCTCTGGTTAAGAAATTGAAAGACCAACTATTTGTTGCCAGAGCTTATTATCCTAGCCTTGCAAAACTCCCAGCAAATGATAAATTGTCTCGCCAACTGAAACAGAATATACAGGAGATGGAGCACATGCTTAGTGAATCTACCACAGATGCTGATCTTCCACCAGTGGCTGAAAGTTATTCAAAGAAGATGGAAAAAACAATAACCAGGGTAAAATCAATTCCTGTGGTTTGCGACAATGTGGACAAGAAATTGAGACAAATATTTGATTTGACTGAGGATGAAGCCAACTTCCACATGAAACAGAGTGCATTCTTGTATAAGCTTAATGTTCAGACAATGCCAAAGAGTCATCACTGCCTGTCACTAAAACTAACTGTAGAATATTTCAAATCCTCGCATAATGACGAAAAGGCTGACGAAGAAAAGTTTATTGATTCTTCATTGCACCATTATGTTATTTTCTCTAATAATGTGCTTGCAGCTTCAGTAGTTATCAACTCAACTGTATTTCATGCGAAAGAAAGTTCGAATCTGGTTTTTCATGTTTTGACTGATGGAGAAAATTATTATGCAATCAAACTCTGGTTCTTGAGAAATCATTATAAGGAAGCTGCTGTTCAAGTGCTAAATGTTGAGCTGGACAGCCAAAAGGAAAATCCATTGCTTCTATCCTTGCCTGAGGAGTTCCGCATTTCATTTCGTGATAATCCATCCAGGAACCGGATTAGAACGGAATACCTTTCAATTTTTTCTGATTCACACTATTTACTTCCTCATTTATTCAGCAATTTGAATAAAGTTGTGGTTCTGGATGATGATGTTGTTATCCAACAAGACTTATCTGCCTTGTGGAATATAGATTTGGGACACAAAGTTAACGGTGCAGTGCAGTTCTGCTCAGTAAAGCTGGGTAAACTGAAAAGTTATCTGGGTGAGAAAGGTTTCAGTCAGAATTCCTGTGCTTGGATGTCAGGGTTGAACATAATTGACCTGGTGAGGTGGAGAGAGCTTGGTCTTACTCAAACTTACAGAAAGTTGATAAAAGAGTTTACCATGCAGGAAGGATCTGTTGAGGGTATTGCATGGCGGGCAAGCTTGCTCACCTTTGAGAATGAAATATATCCACTCAATGAGTCATGGGTTGTGTCTGGAATGGGTCATGATTATACAATTGGTACTCAACCCATTAAGACTGCTTCGGTGCTACACTACAATGGGAAAATGAAACCTTGGCTTGATCTGGGAATTCCTCAGTATAAAAGCTATTGGAAGAAGTTTCTGAACAAAGAAGATCATCTCTTAAGCGAATGCAATGTAAATTCATAA
Predicted protein sequences of Glyma.18g220200
>Glyma.18g220200.1.p sequence-type=predicted peptide transcript=Glyma.18g220200.1 locus=Glyma.18g220200 ID=Glyma.18g220200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSGGGGGGGMGAVPSYGVPAKRRWRGLVIAVLGLVILSMLVPLVFLLGLHNGFHSSGYIYEQKNTPSNEKSLERYDRHDVGHNESEGEQSSHVEDLITKFEPTLPKDVLKKYTREGKSDKQRGSRAPPKGVLQSPPTSNSPRSGQIEQVNNPKTSSTDEGGKSCELTFGSYCLWQQEHRQEMKDALVKKLKDQLFVARAYYPSLAKLPANDKLSRQLKQNIQEMEHMLSESTTDADLPPVAESYSKKMEKTITRVKSIPVVCDNVDKKLRQIFDLTEDEANFHMKQSAFLYKLNVQTMPKSHHCLSLKLTVEYFKSSHNDEKADEEKFIDSSLHHYVIFSNNVLAASVVINSTVFHAKESSNLVFHVLTDGENYYAIKLWFLRNHYKEAAVQVLNVELDSQKENPLLLSLPEEFRISFRDNPSRNRIRTEYLSIFSDSHYLLPHLFSNLNKVVVLDDDVVIQQDLSALWNIDLGHKVNGAVQFCSVKLGKLKSYLGEKGFSQNSCAWMSGLNIIDLVRWRELGLTQTYRKLIKEFTMQEGSVEGIAWRASLLTFENEIYPLNESWVVSGMGHDYTIGTQPIKTASVLHYNGKMKPWLDLGIPQYKSYWKKFLNKEDHLLSECNVNS*






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